Locus 7163

Sequence ID X_DroMel_CAF1
Location 17,973,923 – 17,974,043
Length 120
Max. P 0.772139
window11703

overview

Window 3

Location 17,973,923 – 17,974,043
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 87.86
Mean single sequence MFE -34.64
Consensus MFE -26.98
Energy contribution -27.62
Covariance contribution 0.64
Combinations/Pair 1.24
Mean z-score -1.76
Structure conservation index 0.78
SVM decision value 0.53
SVM RNA-class probability 0.772139
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17973923 120 + 22224390
UUUCCAAAAAGCGGCAGGAAUCGUUGCUGUUGUUUGCCAACGACAAAGGUCGCGCAUCUGUUUAUGCCGAUUACACGUGGAUCAAUGUGGGUGAAUUGUACGAGUAUUCGCAUGAACAGA
..........(((((.....(((((((........).)))))).....)))))...(((((((((((.((.(((.((((...((((........)))))))).))).))))))))))))) ( -38.70)
>DroSec_CAF1 4874 120 + 1
UUUCCAAAAAGCGGCAGGAAUUGUUGCUUUUGUGUGCCAACGACAAAGGUUGCGCAUCUGUUUAUACCGGUUACACGUGGAUCAAUAUGGGUGAAUUGUACGAGUAUUCGUAUAAACAGA
......(((((((((((...))))))))))).(((((.(((.......))))))))(((((((((((.(..(((.((((.((((.......)))..).)))).)))..)))))))))))) ( -35.40)
>DroSim_CAF1 4554 120 + 1
UUUCCAAAAAGCGGCAGGAAUUGUUGCUGUUGUGUGCCAACGACAAAGGUCGCGCAUCUGUUUAUACCGGUUACACGUGGAUCAAUAUGGGUGAAUUGUGCGAGUAUUCGUAUAAACAGA
.........((((((((......))))))))(((((((.........)).))))).(((((((((((.(..(((.(((....((((........)))).))).)))..)))))))))))) ( -34.10)
>DroEre_CAF1 6541 114 + 1
UUUCCAAAAGGCGGCAGAAAUUGUUGCUGUUGUUUGCCAACGACAAAGGUCGCGCAUCUGUUUAUACCGGUAACUCGUGGAUCAAUAUCAGUAAAUUG------CUUUCGUAUAAGCAGA
....((((..(((((((......)))))))..))))....((((....))))....(((((((((((.(((((......(((....)))......)))------))...))))))))))) ( -29.80)
>DroYak_CAF1 4023 114 + 1
UUUUCAAAUGGCGGCAGGAAUUGUUGCCGUUGUUUGCCAACGACAAAGGUCGCGCAUCUGUUUAUACCGGUUACUCAUGGAUCAAUAUGGGUAAAUUG------AAUUCGUCUAAACAGA
....((((..(((((((......)))))))..))))....((((....))))....((((((((.((((((((((((((......))))))).)))))------.....)).)))))))) ( -35.20)
>consensus
UUUCCAAAAAGCGGCAGGAAUUGUUGCUGUUGUUUGCCAACGACAAAGGUCGCGCAUCUGUUUAUACCGGUUACACGUGGAUCAAUAUGGGUGAAUUGU_CGAGUAUUCGUAUAAACAGA
.........((((((((......))))))))...(((...((((....)))).)))(((((((((((.((.(((.(((....((((........)))).))).))).))))))))))))) (-26.98 = -27.62 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:43 2006