Locus 7162

Sequence ID X_DroMel_CAF1
Location 17,973,486 – 17,973,606
Length 120
Max. P 0.713869
window11702

overview

Window 2

Location 17,973,486 – 17,973,606
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 90.16
Mean single sequence MFE -28.86
Consensus MFE -23.14
Energy contribution -22.54
Covariance contribution -0.60
Combinations/Pair 1.29
Mean z-score -1.56
Structure conservation index 0.80
SVM decision value 0.38
SVM RNA-class probability 0.713869
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17973486 120 + 22224390
UUAAUUACAAUUUGCAUUAGGCACGCCAUAAUUGCUGGCAAGUUUUAUUACACGAAACGCCAGUCUGUGCUGCCCGAUUCAAUUAUAGUAGAAUCCUUCUGGGAAUUUAUUAAAUUGUCA
......((((((((.((..((((.((.(((...((((((..(((((.......))))))))))).)))))))))..)).))....(((((((.(((.....))).))))))))))))).. ( -30.50)
>DroSec_CAF1 4433 120 + 1
UUAAUUGCAAUUUGCAUUAGGCACGUCAUAAUUGCUGGCAAGUUUUAUUACACGAAACGCCAGUCCGUGCUGCCCGAUUCAAUUAUGGUAGAACCCUUCUGGGAAUUUAUUAAAUUGCCA
......((((((((.((..((((.(.(((....((((((..(((((.......)))))))))))..))))))))..)).))....(((((((.(((....)))..))))))))))))).. ( -30.60)
>DroSim_CAF1 4125 120 + 1
UUAAUUGCAAUUUGCAUUAGGCACGCCAUAAUUGCUGGCAAGUUUUAUUACACGAAACGCCAGUCCGUGCUGCCCGAUUCAAUUAUGGUAGAACCCUUCUGGGAAUUUAUUAAAUUGCCA
.....(((.....)))...((((.(((((((((((((((..(((((.......))))))))))..((.......))...))))))))))....(((....)))............)))). ( -32.10)
>DroEre_CAF1 6085 117 + 1
UUAAUUGCAAUUUGCAUUAGGCGCGCCAUAAUUGCUGGCAACUUUUAUAG--CGAAACACCAGUCCGGGCUGCCCAAUUCAAUUACAGUAGAACCUUGCUGGGAAUUUAUUAAAUUGU-A
.....(((((((((.....((((.(((......(((((....((((....--.))))..)))))...))))))).(((((.....((((((....)))))).)))))...))))))))-) ( -27.00)
>DroYak_CAF1 3557 119 + 1
UUAAUUGCAAUUUGCAUUAGGCACGCCAUAAUUGCUGGGAAGUUUCAUAACACGGAACGCCACUCUGUGCUGCCCAAUUCAAUUACAGCCGAACCCUUCUGGGAAUUUAUUAAAAUGU-A
............((((((.(((......((((((.((((.((........((((((.......)))))))).))))...))))))..)))...(((....)))..........)))))-) ( -24.10)
>consensus
UUAAUUGCAAUUUGCAUUAGGCACGCCAUAAUUGCUGGCAAGUUUUAUUACACGAAACGCCAGUCCGUGCUGCCCGAUUCAAUUAUAGUAGAACCCUUCUGGGAAUUUAUUAAAUUGUCA
......((((((((.(((.((((.((.......((((((..(((((.......)))))))))))....)))))).)))...............(((....))).......)))))))).. (-23.14 = -22.54 +  -0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:42 2006