Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,973,108 – 17,973,217 |
Length | 109 |
Max. P | 0.550301 |
Location | 17,973,108 – 17,973,217 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 86.67 |
Mean single sequence MFE | -22.03 |
Consensus MFE | -14.84 |
Energy contribution | -15.09 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.12 |
Mean z-score | -1.58 |
Structure conservation index | 0.67 |
SVM decision value | 0.03 |
SVM RNA-class probability | 0.550301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17973108 109 - 22224390 UUCAUGCGCUCAGUGCAUUCGGUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGUCAUUUUCAUUAUAUGCAA--AAAUGGUAUACAUUUUGG-------UUCAUGUUAAAAA ..((((.(((...(((((..(((.((.......((((((((((.....))))).))))).....)).)))..)))))(--(((((.....))))))))-------).))))....... ( -18.60) >DroSec_CAF1 4095 117 - 1 UUCAUGCGCUCAGUGCAUUCGGUAAAUAUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC-AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA ...((((((...))))))..........((((((..(((((((.....)))))))..((((((...((..((.((((.(-....).)))).))..))..))))))...)))))).... ( -25.00) >DroSim_CAF1 3769 117 - 1 UUCAUGCGCUCAGUGCAUUCGCUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC-AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA ...((((((...))))))........((((((((..(((((((.....)))))))..((((((...((..((.((((.(-....).)))).))..))..))))))...)))))))).. ( -26.80) >DroYak_CAF1 3201 118 - 1 UUCAUGCGCUCAGUGCAUUCGAUAAAUUUAACUCAAUUGAUUGAAUUAUAAUAAAAUUGACGGUUUCGCUAUAUACAAAAAACUGCUGUUCGUAUUGAUACGUUUUUCGAGUUAAAAA ...((((((...))))))........((((((((((((.....))))...........((((...(((.(((..(((.........)))..))).)))..))))....)))))))).. ( -17.70) >consensus UUCAUGCGCUCAGUGCAUUCGGUAAAUUUAACUCAAUUGAUUGAAUUACAAUCAAAUUGACAUUUUCAUUAUAUACAAC_AAAUGGUGUACAUUUUGUUAUGUUAUUCGAGUUAAAAA ...((((((...))))))........((((((((..(((((((.....))))))).....(((((...............))))).......................)))))))).. (-14.84 = -15.09 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:41 2006