Locus 7160

Sequence ID X_DroMel_CAF1
Location 17,972,327 – 17,972,462
Length 135
Max. P 0.883161
window11699 window11700

overview

Window 9

Location 17,972,327 – 17,972,436
Length 109
Sequences 3
Columns 110
Reading direction reverse
Mean pairwise identity 83.07
Mean single sequence MFE -24.07
Consensus MFE -15.47
Energy contribution -15.03
Covariance contribution -0.44
Combinations/Pair 1.09
Mean z-score -1.85
Structure conservation index 0.64
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17972327 109 - 22224390
UUGCCAGUGCAACUCUGUAUCAACCGAUACAGUAUCGAUAAGGUAUCGAUAUGGCAUCGAUACAUCGAUGUUACAACAGAGUGGCAAUUUACCAUUGAAUUUGA-UUAAC
((((((.(......(((((((....)))))))((((((((...))))))))(((((((((....)))))))))......).)))))).................-..... ( -31.20)
>DroSec_CAF1 3260 99 - 1
UUGCCAGUGCACCUCAGUAAAAACCGAUACAGUAUCGA-----------UAUGGUAUCGAUGCAUCGAUGUUACAUCUGUGUGACCACUUACAAUUUAAUUUCAGUUAAC
(((..(((((((..(((....(((((((...(((((((-----------((...)))))))))))))..)))....))).)))..))))..)))................ ( -20.30)
>DroSim_CAF1 2930 99 - 1
UUGCCAGUGCACCUCUGUAAAAACCGAUACAGUAUCGA-----------UAUGGUAUCGAUGCAUCGAUGUUACAUCUGUGUGACCACUUACAAUUUAAUUUCAGUUAAC
(((..((((((((..(((((....((((...(((((((-----------((...)))))))))))))...)))))...).)))..))))..)))................ ( -20.70)
>consensus
UUGCCAGUGCACCUCUGUAAAAACCGAUACAGUAUCGA___________UAUGGUAUCGAUGCAUCGAUGUUACAUCUGUGUGACCACUUACAAUUUAAUUUCAGUUAAC
..((((.(((......))).....(((((...)))))..............))))(((((....)))))(((((......)))))......................... (-15.47 = -15.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 17,972,365 – 17,972,462
Length 97
Sequences 3
Columns 97
Reading direction forward
Mean pairwise identity 85.71
Mean single sequence MFE -26.37
Consensus MFE -17.96
Energy contribution -18.07
Covariance contribution 0.11
Combinations/Pair 1.05
Mean z-score -2.94
Structure conservation index 0.68
SVM decision value 0.93
SVM RNA-class probability 0.883161
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17972365 97 + 22224390
ACAUCGAUGUAUCGAUGCCAUAUCGAUACCUUAUCGAUACUGUAUCGGUUGAUACAGAGUUGCACUGGCAAUGGGCGCCUUAUUCGAUUUCACUUAA
..(((((.(((..(.((((.((((((((...))))))))(((((((....))))))).(((((....))))).)))))..))))))))......... ( -28.60)
>DroSec_CAF1 3299 86 + 1
ACAUCGAUGCAUCGAUACCAUA-----------UCGAUACUGUAUCGGUUUUUACUGAGGUGCACUGGCAAUGGGCGCCUUAUUUAAUUUCACUAAA
..(((((((((((((((...))-----------))))...)))))))))......((((((((.((......))))))))))............... ( -25.60)
>DroSim_CAF1 2969 86 + 1
ACAUCGAUGCAUCGAUACCAUA-----------UCGAUACUGUAUCGGUUUUUACAGAGGUGCACUGGCAAUGGGCGCCUUAUUUAAUUUCACUAAA
..(((((((((((((((...))-----------))))...))))))))).......(((((((.((......)))))))))................ ( -24.90)
>consensus
ACAUCGAUGCAUCGAUACCAUA___________UCGAUACUGUAUCGGUUUUUACAGAGGUGCACUGGCAAUGGGCGCCUUAUUUAAUUUCACUAAA
..(((((((((((((..................))))...))))))))).......(((((((.((......)))))))))................ (-17.96 = -18.07 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:40 2006