| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,958,759 – 17,958,861 |
| Length | 102 |
| Max. P | 0.519529 |
| Location | 17,958,759 – 17,958,861 |
|---|---|
| Length | 102 |
| Sequences | 4 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 79.09 |
| Mean single sequence MFE | -22.86 |
| Consensus MFE | -18.49 |
| Energy contribution | -19.30 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.34 |
| Structure conservation index | 0.81 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.519529 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17958759 102 - 22224390 UGCAAGUUGUCGGUAGAAAUUGAAGAGCACGGAAAAAUUGCAGAGAUGCAAAUCACUUUCAAACGACUUUUGAAUAGUAGAUUUGACUUUAGGUUCACAAUU------------------ ....((((((.....(((.((((((.(((.........))).......(((((((((((((((.....)))))).))).)))))).)))))).)))))))))------------------ ( -18.40) >DroSec_CAF1 20985 100 - 1 UGCAGGUUGUCGGUGGAAAUUGAAGAGCACGGACAAAUUGCAGAGAUGCAAAUCACUUUUAAACGAGUUUUGAAUAGUAGAUUUGAUUUUCGUUUA--AAUU------------------ (((((.(((((.(((............))).))))).)))))..(((....)))...((((((((((..(..(((.....)))..)..))))))))--))..------------------ ( -28.10) >DroSim_CAF1 9724 100 - 1 UGCAGGUUGUCGGUGGAAAUUGAAGAGCACGGACAAAUUGCGGAGAUGCAAAUCACUUUUAAACGAGUUUUGAAUAGUAGAUUGGAUUUUCGUUUA--AAUU------------------ .((((.(((((.(((............))).))))).))))...(((....)))...((((((((((..((.(((.....))).))..))))))))--))..------------------ ( -26.20) >DroEre_CAF1 18592 118 - 1 UGCAAACUGUCGGUAAAAAUUAAGGAGCAUGGACAGAUUACAGAGAUUAAAAUCACUUUUAAUCGAGUUUUGAAUAGUUGAUUUGACUUUCUGUUU--AAUUCUAUCAUAUUAUUCCCUU ......(((((.((..............)).)))))...(((((((...(((((((((((((.......))))).)).))))))...)))))))..--...................... ( -18.74) >consensus UGCAAGUUGUCGGUAGAAAUUGAAGAGCACGGACAAAUUGCAGAGAUGCAAAUCACUUUUAAACGAGUUUUGAAUAGUAGAUUUGACUUUCGGUUA__AAUU__________________ (((((.(((((.(((............))).))))).)))))((((..(((((((((((((((.....)))))).))).))))))..))))............................. (-18.49 = -19.30 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:28 2006