| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,958,280 – 17,958,377 |
| Length | 97 |
| Max. P | 0.794483 |
| Location | 17,958,280 – 17,958,377 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -25.47 |
| Consensus MFE | -20.52 |
| Energy contribution | -20.30 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.73 |
| Structure conservation index | 0.81 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.794483 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17958280 97 + 22224390 CGGUGAAUCCC-CAAGUC--UCUGUCCUACGUCCGAGUUCCACUAAGCAAGUUUUGAGAUCGUUUUAAAAACAAAAACUUGACACGUUGAGCUCGUUCGU .((.(....))-).....--........(((..(((((((.((....((((((((..................))))))))....)).)))))))..))) ( -22.27) >DroVir_CAF1 29642 97 + 1 CAAGAGCAGCU-CGCGCU--UCUGCCCUACGCACGAGUUCCACUAAUCAAGUUUUGAGCGGAUUCGAAAGUCGAAAACUUGACACGUUGAGCUCGUCCGU ..((.((((..-......--.)))).))(((.((((((((.((...(((((((((..((..........))..)))))))))...)).)))))))).))) ( -29.10) >DroSec_CAF1 20429 97 + 1 CGAGGAAUCCC-CAAGUC--UCUGUCCUACGUCCGAGUUCCACUAAGCAAGUUUUGAGAUCGUUUUAAAAACAAAAACUUGACACGUUGAGCUCGUUCGU ..((((.....-......--....))))(((..(((((((.((....((((((((..................))))))))....)).)))))))..))) ( -23.33) >DroEre_CAF1 17836 97 + 1 UGGGAAGUUCC-CAAAUC--UCUGUCCUACGUCCGAGUUCCACUAAGCAAGUUUUGAGAUCGUUUUAAAAACAAAAACUUGACACGUUGAGCUCGUUCGU ((((.....))-))....--........(((..(((((((.((....((((((((..................))))))))....)).)))))))..))) ( -27.07) >DroYak_CAF1 17993 97 + 1 CGGGGUAUCCC-CAAACC--UCUGUCCUACGUCCGAGUUCCACUAAGCAAGUUUUGAGAUCGUUUUAAAAACAAAAACUUGACACGUUGAGCUCGUUUGU .((((...)))-).....--........(((..(((((((.((....((((((((..................))))))))....)).)))))))..))) ( -26.27) >DroMoj_CAF1 24958 98 + 1 CCAUACCAUAUCCACAUUUGGCUGUCCUACGAGCGAGUUCCACUAAUCAAGUUUUGAGUG--UUCGAAAAUCAAAAACUUGACACGUUGAGCUCGUCUGU .......(((.(((....))).)))...(((..(((((((.((...(((((((((..((.--.......))..)))))))))...)).)))))))..))) ( -24.80) >consensus CGAGAAAUCCC_CAAAUC__UCUGUCCUACGUCCGAGUUCCACUAAGCAAGUUUUGAGAUCGUUUUAAAAACAAAAACUUGACACGUUGAGCUCGUUCGU ............................(((..(((((((.((....((((((((..................))))))))....)).)))))))..))) (-20.52 = -20.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:27 2006