Locus 7154

Sequence ID X_DroMel_CAF1
Location 17,957,356 – 17,957,455
Length 99
Max. P 0.889907
window11683

overview

Window 3

Location 17,957,356 – 17,957,455
Length 99
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 82.91
Mean single sequence MFE -21.95
Consensus MFE -14.38
Energy contribution -14.62
Covariance contribution 0.25
Combinations/Pair 1.33
Mean z-score -2.24
Structure conservation index 0.65
SVM decision value 0.96
SVM RNA-class probability 0.889907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17957356 99 - 22224390
UAAGCCUCUGUCUAUAGACAAUCAAAGGAGGCAACUUUUGAAAAAGCCACAAG-AAAGGACGAGGCAUGAAAGAAAUUCUUCGAAACGAAAGGCAGACUG
...(((((((((....))).......))))))..((((((......((.....-...)).(((((.((.......)).)))))...))))))........ ( -21.31)
>DroSec_CAF1 19493 99 - 1
UAAGCCUCUGUCUGUAGACAAUCAAAGGUGGCAACUUUUGAAAAAGCCACAAG-AAAGGACGAGGCAUGAAAGAAAUUCUUCGAAAGGAAAGCCAGACUG
...(((((((((....)))).((((((((....))))))))....(((.....-...)).)))))).............(((....)))........... ( -23.90)
>DroEre_CAF1 16889 93 - 1
UAAGCCUCUGUCUAUAGACAAUCAUAGAAGGCAACUUUUCAAAAAGUCACAGG-AAUGGAUAGGGCAUCAAAGAAAUUCUUCGAGAGAAAAACC------
...(((.((((((((.(((......(((((....)))))......))).....-.))))))))))).............(((....))).....------ ( -21.50)
>DroYak_CAF1 17083 100 - 1
UAAGCCUCCGUCUAUAGACAAUGAAGGAAGACAUUUUUUCAAAAAGCCACAAAAAAAGGACAAGGCAUGAAAGAAAUUCUCCGAAAGGAAAACCCGACUG
...(((((((((....)))..((((((((....))))))))................)))...))).............(((....)))........... ( -21.10)
>consensus
UAAGCCUCUGUCUAUAGACAAUCAAAGAAGGCAACUUUUCAAAAAGCCACAAG_AAAGGACAAGGCAUGAAAGAAAUUCUUCGAAAGGAAAACCAGACUG
...(((((.(((....)))..(((((((......)))))))....................))))).............(((....)))........... (-14.38 = -14.62 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:26 2006