Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,956,656 – 17,956,761 |
Length | 105 |
Max. P | 0.521640 |
Location | 17,956,656 – 17,956,761 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 75.67 |
Mean single sequence MFE | -16.46 |
Consensus MFE | -12.16 |
Energy contribution | -12.28 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.14 |
Mean z-score | -1.04 |
Structure conservation index | 0.74 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521640 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17956656 105 + 22224390 ACACCAACAUCAUCUUCCCUCCAUUUCCAUCCGAUUCCCAUCUCGAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA- ........((((....................(((....)))..((((...((((...)))).))))....)))).((((((..((........))..)))))).- ( -18.50) >DroSec_CAF1 18829 91 + 1 --------------UCCCCUCCAUUUCCAUCCGAUUCACUUCUCCAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA- --------------.................((((((((..(((((.....)))...))..)))....)))))...((((((..((........))..)))))).- ( -14.70) >DroSim_CAF1 8083 91 + 1 --------------UCCCCUCCAUUUCCAUCCGAUUCACUUCUCCAACUUCUGGCACAGCCAUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA- --------------.....................................(((.(((....))).))).......((((((..((........))..)))))).- ( -15.40) >DroEre_CAF1 16318 89 + 1 --------------GUAUCCCCAU---CAUCCACUUCCCCUCUCCAACUUUUGGCACAGUCGUGCUCCAGUUGAUACCCAAAUGCCGCACUCCAGGUGCCCAGAUG --------------.......(((---(................(((((...(((((....)))))..))))).............((((.....))))...)))) ( -18.90) >DroYak_CAF1 16554 88 + 1 --------------GCUUCUCCAU---CAUCCCC-UCCAUUCUCCAACUUUUGGCCCAGUCGUGCUCCAAAUGAUAACCAAGUGCCGCACUCCAGGUGCCCAGAAA --------------..........---.......-.............(((((((((.(..((((..((..((.....))..))..))))..).)).).)))))). ( -14.80) >consensus ______________UCCCCUCCAUUUCCAUCCGAUUCCCUUCUCCAACUUCUGGCACAGCCGUGUUCCAAUUGAUAAGCAAGUGCUGCACUCCAGGUGCUUGUUA_ ....................................................(((((....((((..((.(((.....))).))..)))).....)))))...... (-12.16 = -12.28 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:25 2006