Locus 7151

Sequence ID X_DroMel_CAF1
Location 17,951,846 – 17,951,944
Length 98
Max. P 0.909672
window11679

overview

Window 9

Location 17,951,846 – 17,951,944
Length 98
Sequences 4
Columns 101
Reading direction reverse
Mean pairwise identity 88.72
Mean single sequence MFE -20.09
Consensus MFE -18.02
Energy contribution -18.77
Covariance contribution 0.75
Combinations/Pair 1.04
Mean z-score -1.84
Structure conservation index 0.90
SVM decision value 1.07
SVM RNA-class probability 0.909672
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17951846 98 - 22224390
GCCGAACAACAUGAAACAGAUCGUUAAAAUGGUUUUUCUAGAUCAAGUCCAAAGUGGCACGGUCUAAGAAAAACCUUUUAAAUGAACACAAACGGAAU---
.(((..(.....).....(.(((((.(((.((((((((((((((..(((......)))..))))).))))))))).))).))))).).....)))...--- ( -24.00)
>DroSec_CAF1 11040 98 - 1
GCCGAACAACAUGAAACAGAUCGUUAAAAUGGUUUUUCUAGAUCAAGUCCAAAGUGGCACGGUCUAAGAAAAACCUUUUAAAUGAAUGCAAACUGAAU---
....................(((((.(((.((((((((((((((..(((......)))..))))).))))))))).))).))))).............--- ( -22.00)
>DroEre_CAF1 11763 90 - 1
GCCGAACAACAUGAAGCAGAUCGUUAAAAUGGUUUUUCUAGAUCAAGUCCAAAGUGGCACGGUCUAAGGAAAACCUUUCAAAUGA-----------AUAAU
....................(((((..((.((((((((((((((..(((......)))..))))).))))))))).))..)))))-----------..... ( -20.00)
>DroYak_CAF1 11760 101 - 1
GCCGAACAACAUGAAACAGAUCGUUAAAAUGCUUUUUCUAGAUCAAGUCCAAAGUGGCACGGCCUAAGGAAAACCUUUCAAAUGAACACAAACGGAAUAAU
.(((..............((((...((((....))))...)))).........(((.........((((....)))).........)))...)))...... ( -14.37)
>consensus
GCCGAACAACAUGAAACAGAUCGUUAAAAUGGUUUUUCUAGAUCAAGUCCAAAGUGGCACGGUCUAAGAAAAACCUUUCAAAUGAACACAAACGGAAU___
....................(((((.(((.((((((((((((((..(((......)))..))))).))))))))).))).)))))................ (-18.02 = -18.77 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:23 2006