Locus 7148

Sequence ID X_DroMel_CAF1
Location 17,943,394 – 17,943,513
Length 119
Max. P 0.983043
window11672

overview

Window 2

Location 17,943,394 – 17,943,513
Length 119
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 98.10
Mean single sequence MFE -18.07
Consensus MFE -17.67
Energy contribution -17.58
Covariance contribution -0.08
Combinations/Pair 1.04
Mean z-score -1.30
Structure conservation index 0.98
SVM decision value 1.93
SVM RNA-class probability 0.983043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17943394 119 + 22224390
-UUGUUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGCAA
-...((((((........((((.........))))..((((.(((((.......)))))................(((....))))))).....((((.....)))).......)))))) ( -19.20)
>DroVir_CAF1 4193 119 + 1
-UUGUUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGUAA
-.(((((((((.......((((.........))))..((((.(((((.......)))))...........))))....))).))))))......((((.....))))............. ( -17.30)
>DroPse_CAF1 5381 119 + 1
-UUGGUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGCAA
-....(((((........((((.........))))..((((.(((((.......)))))................(((....))))))).....((((.....)))).......))))). ( -19.10)
>DroGri_CAF1 4047 119 + 1
-UUGUUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGUAA
-.(((((((((.......((((.........))))..((((.(((((.......)))))...........))))....))).))))))......((((.....))))............. ( -17.30)
>DroWil_CAF1 4467 118 + 1
--UUUGGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGCAA
--....((((........((((.........))))..((((.(((((.......)))))................(((....))))))).....((((.....)))).......)))).. ( -18.20)
>DroMoj_CAF1 4348 120 + 1
UUUGUUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGUAA
..(((((((((.......((((.........))))..((((.(((((.......)))))...........))))....))).))))))......((((.....))))............. ( -17.30)
>consensus
_UUGUUGCAGUACCUCCCAGUCUUUUUUCCUGACUUCGUAUUCCAGAUCCCAUUUCUGGCCUUCACAAAUAUACAUACGCUCGUAAUACUCUUCGCAAAUCUCUUGCAAUUCGCCUGCAA
.....(((((........((((.........))))..((((.(((((.......)))))................(((....))))))).....((((.....)))).......))))). (-17.67 = -17.58 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:17 2006