Locus 7146

Sequence ID X_DroMel_CAF1
Location 17,939,556 – 17,939,666
Length 110
Max. P 0.916160
window11669

overview

Window 9

Location 17,939,556 – 17,939,666
Length 110
Sequences 4
Columns 110
Reading direction reverse
Mean pairwise identity 96.35
Mean single sequence MFE -11.33
Consensus MFE -10.69
Energy contribution -10.95
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -2.04
Structure conservation index 0.94
SVM decision value 1.11
SVM RNA-class probability 0.916160
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17939556 110 - 22224390
AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGCUUAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU
..........................................((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67)
>DroSec_CAF1 2399 109 - 1
AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU
........................................-.((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67)
>DroSim_CAF1 2456 109 - 1
AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU
........................................-.((((((((((((..((((((.((((..................))))))..)))))))))))))))). ( -11.67)
>DroEre_CAF1 2491 109 - 1
AAUCAAACUCAGACUCAAACUCAAACUCAAACUCAACUGC-UAUAAAUAAUUCAGAUCAACGAUUCAAAACUACAGCCAAACAUCUGAACAUAUUGAUGAAUUAUUUAUU
........................................-.((((((((((((((........)).......(((........)))..........)))))))))))). ( -10.30)
>consensus
AAUCAAAAUCAAACUCAGACUCAAACUCAAACUCAACUGC_UAUAAAUAAUUCAGAUCAACGAUUCAAAACAACAGCCAAACAUCUGAACGCCUUGAUGAAUUAUUUAUU
..........................................((((((((((((..((((((.((((..................))))))..)))))))))))))))). (-10.69 = -10.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:14 2006