Locus 7145

Sequence ID X_DroMel_CAF1
Location 17,938,572 – 17,938,667
Length 95
Max. P 0.508708
window11668

overview

Window 8

Location 17,938,572 – 17,938,667
Length 95
Sequences 3
Columns 95
Reading direction reverse
Mean pairwise identity 85.26
Mean single sequence MFE -17.03
Consensus MFE -14.41
Energy contribution -14.20
Covariance contribution -0.21
Combinations/Pair 1.20
Mean z-score -1.43
Structure conservation index 0.85
SVM decision value -0.05
SVM RNA-class probability 0.508708
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17938572 95 - 22224390
AAAAAGGGCAUUAAAGGAUCAGUCAAUUCUGAUAUAAACACUAGCUACUAGCUGCUAGUUCUUAGUUGGUUUAUGAAGAAAUAAAUAAUCUAAUA
...((((((........(((((......)))))........((((........)))))))))).(((((.((((..(....)..)))).))))). ( -17.30)
>DroSec_CAF1 1441 95 - 1
AAAAUGGGCGUCUAAGGAUCAGUCGAUUCUGAUGUAAACAGUAGUAACUAGCUACAAGCUCUUAGUCAGUUUAUGAAGAAAUAAAUAAAAUAAUA
...((((((..(((((((((((......))))).......(((((.....)))))....))))))...))))))..................... ( -18.60)
>DroSim_CAF1 1445 95 - 1
AAAAUGAGCGUCUAAAGAUCAAUGGAUUCUGAUGUAAACAGUAGUUACUCGCUACAAGCUCUUAGUUAGUUUAUGAAGAAAUAAAUAAAAUAAUA
.....(((((((....((((....))))..))).......(((((.....)))))..))))...((((.(((((..(....)..))))).)))). ( -15.20)
>consensus
AAAAUGGGCGUCUAAGGAUCAGUCGAUUCUGAUGUAAACAGUAGUUACUAGCUACAAGCUCUUAGUUAGUUUAUGAAGAAAUAAAUAAAAUAAUA
.....((((........(((((......))))).......(((((.....)))))..)))).......((((((......))))))......... (-14.41 = -14.20 +  -0.21)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:13 2006