Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,972,986 – 1,973,105 |
Length | 119 |
Max. P | 0.562043 |
Location | 1,972,986 – 1,973,105 |
---|---|
Length | 119 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 89.43 |
Mean single sequence MFE | -35.70 |
Consensus MFE | -25.24 |
Energy contribution | -26.30 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.70 |
Structure conservation index | 0.71 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.562043 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1972986 119 - 22224390 GGCAUGAAGCUGGGUCCAGCUCUCAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACACGCAACA-AAGUCAAGGUUUCAAAAGACCGC (((.((((((((....))))).)))...((((((((..(((((.(.((........)).)))))).)))..(((............))))))))..-..)))..((((......)))).. ( -34.80) >DroSec_CAF1 5867 119 - 1 GGCAUGAAGCUGGGUCCAGCUCUCAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUUCCGCCAGGCGAUGUAAAGGAUUAAAAACAUGCAACU-UAGUCGAGGUUUCACAAGACCGA .(((((.(((((....))))).((.....(((.(((..(((((((.((........))))))))).))).))).....)).......)))))....-.......((((......)))).. ( -37.20) >DroEre_CAF1 6061 120 - 1 GGCAUGAAGCUGGGUCCCGCACUAAAGAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAGAAACUUGCAACUAAAGUGAAGGUUGCAAAAUGACAU (((.....))).(((((..(((........)))(((..(((((.(.((........)).)))))).)))........)))))......((((((((........))))))))........ ( -33.30) >DroYak_CAF1 6100 120 - 1 GGCAUGAAACUGGGUCCAGCACUAAAGAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACUUGCAUCUAAAGUCAAGGUUUCAAAAUGCCAU (((((((((((..(.(...(((........)))(((..(((((.(.((........)).)))))).)))(((((((.(.........))))))))....).)..)))))))...)))).. ( -37.50) >consensus GGCAUGAAGCUGGGUCCAGCACUAAAAAUUGUGGCCAAGGUGGAGUCCAUUAAGGAGGUCCCGCCAGGCGAUGUAAAGGAUUAAAAACAUGCAACU_AAGUCAAGGUUUCAAAAGACCAU .(((((..((((....))))..........((.(((..(((((.(.((........)).)))))).))).))...............)))))............(((........))).. (-25.24 = -26.30 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:48 2006