Locus 7139

Sequence ID X_DroMel_CAF1
Location 17,923,650 – 17,923,759
Length 109
Max. P 0.618651
window11659

overview

Window 9

Location 17,923,650 – 17,923,759
Length 109
Sequences 4
Columns 109
Reading direction reverse
Mean pairwise identity 75.71
Mean single sequence MFE -26.88
Consensus MFE -17.01
Energy contribution -20.07
Covariance contribution 3.06
Combinations/Pair 1.04
Mean z-score -1.64
Structure conservation index 0.63
SVM decision value 0.17
SVM RNA-class probability 0.618651
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17923650 109 - 22224390
AAAAACAACCAGAAGCCUGCAACAUCACAAAUCCAAGUGCAUUUGAUGGCUCGACGGCCAGCGAUAUGGAGGUCGAGCCCAUGGAAUGGCAGGAGUCUAUUGAAGAGGA
.....(((..(((..(((((.....(((........)))(((((.((((((((((..(((......)))..)))))).)))).))))))))))..))).)))....... ( -41.30)
>DroSec_CAF1 707 106 - 1
AAAAACAACCAGAGAUCUGCAACAUCACAAAUACAAGUGCAUUU---GGCUCGACGGCCAGCGAUAUGGAGGUCGAGCCCAUGGAAUGGCAGGAUUCCAUUGAAGAGGA
.....(((...(((.(((((.....(((........)))(((((---((((((((..(((......)))..))))))))....)))))))))).)))..)))....... ( -32.10)
>DroEre_CAF1 656 93 - 1
GAAAACAAGCAGAGAACUGUAACAUCUCAAAUCCAAGUGCAUUUAAUGGCUCAUCGUCCAGCGAAAUAAAGCCCGAGCCCAUGGAAUGGGAGG----------------
........((((....))))....(((((..((((.(.((.((....((((..(((.....))).....)))).)))).).)))).)))))..---------------- ( -17.80)
>DroYak_CAF1 640 93 - 1
GAAAAGAAGCUAAGAACUGCAACAUCACAAAUUCAAGUGCAUUUAAAGGCUCGUCAUCCAGCGAAAUAGAGCCCGAGCCCAUGGAAUGGGAGG----------------
................((.(.....(((........)))(((((...((((((...((.(......).))...))))))....)))))).)).---------------- ( -16.30)
>consensus
AAAAACAACCAGAGAACUGCAACAUCACAAAUCCAAGUGCAUUUAAUGGCUCGACGGCCAGCGAAAUAGAGCCCGAGCCCAUGGAAUGGCAGG________________
................((((.....(((........)))(((((...((((((((.((((......)))).))))))))....)))))))))................. (-17.01 = -20.07 +   3.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:05 2006