Locus 7137

Sequence ID	X_DroMel_CAF1
Location	17,921,467 – 17,921,560
Length	93
Max. P	0.938792

overview

Window 6

Location	17,921,467 – 17,921,560
Length	93
Sequences	6
Columns	93
Reading direction	forward
Mean pairwise identity	81.03
Mean single sequence MFE	-43.35
Consensus MFE	-29.33
Energy contribution	-31.03
Covariance contribution	1.70
Combinations/Pair	1.17
Mean z-score	-2.49
Structure conservation index	0.68
SVM decision value	1.03
SVM RNA-class probability	0.903818
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17921467 93 + 22224390
UCUGCCCUGCAUCGGCGGCUCCGGCAACUCCCUGUUAGAGCCAAAGAUGUAGGACAGGAGCCUGGCCUGGGGCUGGUGCCAGCUAAUGGCCAU
((((.((((((((...(((((..(((......)))..)))))...)))))))).))))....(((((...(((((....)))))...))))). ( -49.40)
>DroPse_CAF1 14862 90 + 1
UCUGCCGCCCCUUGGCCCCUCC---UCCUCUUCGAUGGACGGAAAAUUGUAGGACAGGGGCAUGGCCUGGAGCUGGUGCCAGCUGGUGGCCAU
...((((((((...((((((((---(((........))).)))....((.....)))))))..)).....(((((....)))))))))))... ( -37.50)
>DroSec_CAF1 15691 93 + 1
UCUGCCCAGCAUCGGCGGCUCCGGCAGCUCCCUGCUCGAGCCAAAGAUGUAGGACAGGAGCCUGGCCUGGGGCUGGUGCCAGCUAAUGGCCAU
((((.((.(((((...(((((.(((((....))))).)))))...))))).)).))))....(((((...(((((....)))))...))))). ( -48.30)
>DroEre_CAF1 17006 93 + 1
UCUGCCCUGCAUCGGCGGCGCCGGCAGCUCCCUGCUCGAACCAAAGAUGUAGGACAGGACCCUGGCCUGGGGCUGGUGCCAGCUAAUGGCCAU
((((.((((((((...((..(.(((((....))))).)..))...)))))))).))))....(((((...(((((....)))))...))))). ( -44.70)
>DroYak_CAF1 14957 93 + 1
UCUACCCUGCAUCGGCGGCGCCGGCAGCUCCCUGCUCGAGCCAAAGAUGUAGGACAGGACCCUGGCCUGGGGCUGGUGCCAGCUAAUGGCCAU
(((..((((((((...(((..((((((....)))).)).)))...))))))))..)))....(((((...(((((....)))))...))))). ( -44.80)
>DroPer_CAF1 14812 87 + 1
UCUGCCGCCACUUGGCCCCUC------CUCUUCGAUGGACGGAAAAUUGUAGGACAGGGGCAUGGCCUGGAGCUGGUGCCAGCUGGUGGCCAU
...((((((.((.((((.(((------(((((((((.........)))).))))..))))...)))).))(((((....)))))))))))... ( -35.40)
>consensus
UCUGCCCUGCAUCGGCGGCUCCGGCAGCUCCCUGCUCGAGCCAAAGAUGUAGGACAGGAGCCUGGCCUGGGGCUGGUGCCAGCUAAUGGCCAU
((((.((.(((((...((.((.((((......)))).)).))...))))).)).))))....(((((...(((((....)))))...))))). (-29.33 = -31.03 +   1.70)

alignment

secondary structure

dotplot

Window 7

Location	17,921,467 – 17,921,560
Length	93
Sequences	6
Columns	93
Reading direction	reverse
Mean pairwise identity	81.03
Mean single sequence MFE	-42.88
Consensus MFE	-32.11
Energy contribution	-32.50
Covariance contribution	0.39
Combinations/Pair	1.28
Mean z-score	-2.70
Structure conservation index	0.75
SVM decision value	1.27
SVM RNA-class probability	0.938792
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17921467 93 - 22224390
AUGGCCAUUAGCUGGCACCAGCCCCAGGCCAGGCUCCUGUCCUACAUCUUUGGCUCUAACAGGGAGUUGCCGGAGCCGCCGAUGCAGGGCAGA
.(((((....((((....))))....))))).....(((((((.((((..(((((((..(((....)))..)))))))..)))).))))))). ( -43.20)
>DroPse_CAF1 14862 90 - 1
AUGGCCACCAGCUGGCACCAGCUCCAGGCCAUGCCCCUGUCCUACAAUUUUCCGUCCAUCGAAGAGGA---GGAGGGGCCAAGGGGCGGCAGA
((((((...(((((....)))))...))))))(((((((((((.......(((.(((........)))---))))))))..))))))...... ( -40.91)
>DroSec_CAF1 15691 93 - 1
AUGGCCAUUAGCUGGCACCAGCCCCAGGCCAGGCUCCUGUCCUACAUCUUUGGCUCGAGCAGGGAGCUGCCGGAGCCGCCGAUGCUGGGCAGA
.(((((....((((....))))....))))).....((((((..((((..((((((..((((....))))..))))))..))))..)))))). ( -48.30)
>DroEre_CAF1 17006 93 - 1
AUGGCCAUUAGCUGGCACCAGCCCCAGGCCAGGGUCCUGUCCUACAUCUUUGGUUCGAGCAGGGAGCUGCCGGCGCCGCCGAUGCAGGGCAGA
.(((((....((((....))))....))))).....(((((((.((((..(((((((.((((....))))))).))))..)))).))))))). ( -45.20)
>DroYak_CAF1 14957 93 - 1
AUGGCCAUUAGCUGGCACCAGCCCCAGGCCAGGGUCCUGUCCUACAUCUUUGGCUCGAGCAGGGAGCUGCCGGCGCCGCCGAUGCAGGGUAGA
.(((((....((((....))))....))))).....((..(((.((((..(((((((.((((....))))))).))))..)))).)))..)). ( -43.80)
>DroPer_CAF1 14812 87 - 1
AUGGCCACCAGCUGGCACCAGCUCCAGGCCAUGCCCCUGUCCUACAAUUUUCCGUCCAUCGAAGAG------GAGGGGCCAAGUGGCGGCAGA
((((((...(((((....)))))...))))))....(((((((((.....(((.(((........)------)).)))....)))).))))). ( -35.90)
>consensus
AUGGCCAUUAGCUGGCACCAGCCCCAGGCCAGGCUCCUGUCCUACAUCUUUGGCUCGAGCAGGGAGCUGCCGGAGCCGCCGAUGCAGGGCAGA
.(((((....((((....))))....))))).....(((((((.((((..((((((.(((.....)))....))))))..)))).))))))). (-32.11 = -32.50 +   0.39)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:03 2006