| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,919,348 – 17,919,441 |
| Length | 93 |
| Max. P | 0.671747 |
| Location | 17,919,348 – 17,919,441 |
|---|---|
| Length | 93 |
| Sequences | 5 |
| Columns | 104 |
| Reading direction | reverse |
| Mean pairwise identity | 73.10 |
| Mean single sequence MFE | -31.08 |
| Consensus MFE | -11.70 |
| Energy contribution | -12.62 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.22 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.38 |
| SVM decision value | 0.29 |
| SVM RNA-class probability | 0.671747 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17919348 93 - 22224390 UGCAACUAUAACAGU----GAUCGUGC--ACAACAGAGCUGCUCCAGCGCUGUGCAACACUGGUGGCCGCGUAGCGCGC----GUGCUUACCAAUACUUUGCU- .((((.......(((----(....(((--(((.....((((...))))..)))))).))))((((((((((.....)))----).)).))))......)))).- ( -31.90) >DroSec_CAF1 13554 93 - 1 UGCAACUUUAACAGU----GAUCGUGC--AUUACAGCGCUGCUCCAGCGCUGUGCAACACUGGCGGCCGCGUAGCGCGC----GUGUUUACCAAUACUUUGCU- .((((......((((----(....(((--...(((((((((...)))))))))))).)))))..(((((((.....)))----).)))..........)))).- ( -33.70) >DroEre_CAF1 14861 94 - 1 UGCAACUUUAACAGU----GAUCGUGC--AUAACAGCGCUGCUCGGACGCUGUGCAACACUGGCGUCCGCGUAGCGCGC----GUGUUUACCAAUACUUGGGUA ((((...(((....)----))...)))--)..((.(((((((.(((((((((((...))).)))))))).)))))))..----))...((((........)))) ( -36.70) >DroYak_CAF1 12822 93 - 1 UGCAACUGUUACAGU----GAUCGUGC--AUAACAGUGCUGCCCGAGCGCUGUGCAACACUGGCGUCCGCGUAGCGCGC----GUGUUUACCAAUACUUGGGU- .(((.((((((..((----......))--.))))))))).(((((((((((((((.((......))..)))))))))..----(((((....)))))))))))- ( -30.90) >DroAna_CAF1 13706 103 - 1 UAAACCUUUAACACUCUGUUAAAGGGCUUUUAACAUCUAUAUAAAGACACUGAUCAACACUGAAAGCAAAGUGGCGCGUUACAGUGCUCAAAAAGGUUCAAGU- ....((((((((.....))))))))((((((....(((......)))...(((....((((........))))((((......))))))).))))))......- ( -22.20) >consensus UGCAACUUUAACAGU____GAUCGUGC__AUAACAGCGCUGCUCCAGCGCUGUGCAACACUGGCGGCCGCGUAGCGCGC____GUGUUUACCAAUACUUGGGU_ .......................(((......((((((((.....))))))))....)))..........(((((((......)))).)))............. (-11.70 = -12.62 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:02 2006