Locus 7135

Sequence ID X_DroMel_CAF1
Location 17,918,977 – 17,919,071
Length 94
Max. P 0.514448
window11654

overview

Window 4

Location 17,918,977 – 17,919,071
Length 94
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 78.91
Mean single sequence MFE -28.98
Consensus MFE -20.14
Energy contribution -21.24
Covariance contribution 1.10
Combinations/Pair 1.28
Mean z-score -1.43
Structure conservation index 0.69
SVM decision value -0.04
SVM RNA-class probability 0.514448
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17918977 94 + 22224390
GGCGCAAUUGGAGGCAACCAGUCCGAGAUUAUCGGAUGCUUCGAUGUUUUGGGUGCUUGGAUGUUCAAAUGUUUGGAUGU----G--UUUGCAUGCUUUG---------
(((.(((.(.((((((.....(((((.....))))))))))).)....))).((((..(.((((((((....))))))))----.--)..)))))))...--------- ( -26.60)
>DroSec_CAF1 13185 95 + 1
GGCGCAAUUGGAGGCACCCAGUCCGAGAUUAUCGGAUGCUUCGAUGUU-UGGGUGCUUGGAUGUUCGAAUGUUUGGAUGU----GUGUUUGCAUGCUUUG---------
(((((((....(((((((((((((((.....))))))((......)).-)))))))))(.((((((((....))))))))----.)..))))..)))...--------- ( -30.30)
>DroSim_CAF1 13705 95 + 1
GGCGCAAUUGGAGGCACCCAGUCCGAGAUUAUCGGAUGCUUCGAUGUU-UGGGUGCUUGGAUGUUCGAAUGUUUGGAUGU----GUGCUUGCAUGCUUUG---------
(((((......(((((((((((((((.....))))))((......)).-)))))))))..((((((((....))))))))----)))))...........--------- ( -31.80)
>DroEre_CAF1 14467 108 + 1
AGCGCAAUUGGAGGCACCCAGUCUGAGAUUAUCGGAUGCUUCGAUGAU-UGGGUGUGUGGAUGUUUGGAUGUUCGGAUGUUGGCAUGUUUGCAUGUUUUGCGGGGACGU
...((((......((((((((((.......((((((...)))))))))-)))))))((.(((((((((....))))))))).))....)))).......(((....))) ( -34.21)
>DroYak_CAF1 12456 85 + 1
GGCGCAAUUGGAGGCACCCAGUCCGAGAUUAUCGGAUGCUUCUAUGUU---------UGAAUGUUU--------AAAUGUUGGGAUGUUUGCAUGGUUUUGG-------
...((...((.(((((((((((((((.....))))))......(((((---------(((....))--------)))))))))).))))).))..)).....------- ( -22.00)
>consensus
GGCGCAAUUGGAGGCACCCAGUCCGAGAUUAUCGGAUGCUUCGAUGUU_UGGGUGCUUGGAUGUUCGAAUGUUUGGAUGU____GUGUUUGCAUGCUUUG_________
...((((....(((((((((((((((.....))))))((......))..)))))))))..((((((((....))))))))........))))................. (-20.14 = -21.24 +   1.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:01 2006