| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,918,729 – 17,918,840 |
| Length | 111 |
| Max. P | 0.589399 |
| Location | 17,918,729 – 17,918,840 |
|---|---|
| Length | 111 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 91.33 |
| Mean single sequence MFE | -28.27 |
| Consensus MFE | -20.90 |
| Energy contribution | -21.65 |
| Covariance contribution | 0.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.83 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.589399 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17918729 111 - 22224390 CGAUUCAGUUCGGUUUAGUUGGGUUCAGUCGU-GCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCCUUCGAUUUGACUACACUUUCCCAACUGGGCAUUUU (((......)))(((((((((((...((((((-((........))))........((((........))))..............)))).......)))))))))))..... ( -30.40) >DroSec_CAF1 12935 111 - 1 CGAUUCAGUUCGGUUUAGUUGGGUUCAGUCGU-GCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGCCUACACUUUCCCAACUGGGCAUUUU .(.(((((((.((...((((((((..((((((-((........))))........((((........)))).........)))).))))).)))..)).))))))))..... ( -28.70) >DroSim_CAF1 13447 111 - 1 CGAUUCAGUUCGGUUUAGUUGGGUUCAGUCGU-GCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGCCUAGACUUUCCCAACUGGGCAUUUU (((......)))(((((((((((...((((((-((........))))........((((........))))...................))))..)))))))))))..... ( -32.80) >DroYak_CAF1 12224 111 - 1 CGAUUCAGUUGAGUUUAGUUGGGUUCAGUCGACAUAGCCAUAUGCACA-AUAUCCCAGCCUCAAAACGCUGUCUUCAUUCGUUUUCACUACACUUUCCCAAGUGGGCAUUAU .((..((((((((....((((((....((.(.((((....))))))).-....))))))))))....))))...))..............(((((....)))))........ ( -21.20) >consensus CGAUUCAGUUCGGUUUAGUUGGGUUCAGUCGU_GCCGACAUAUGCACAAAUAUCCCAGCUUCAAAACGCUGUUUCCAUUCGAUUUGACUACACUUUCCCAACUGGGCAUUUU ............(((((((((((....((((....))))................((((........)))).........................)))))))))))..... (-20.90 = -21.65 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:31:00 2006