Locus 7133

Sequence ID X_DroMel_CAF1
Location 17,917,407 – 17,917,521
Length 114
Max. P 0.659907
window11652

overview

Window 2

Location 17,917,407 – 17,917,521
Length 114
Sequences 5
Columns 117
Reading direction reverse
Mean pairwise identity 85.06
Mean single sequence MFE -21.36
Consensus MFE -15.40
Energy contribution -16.28
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -1.77
Structure conservation index 0.72
SVM decision value 0.27
SVM RNA-class probability 0.659907
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17917407 114 - 22224390
GUGCAUCAAAACCGCAUUAAAUUCAAUUAGAUAUAUACAUA--GCUGAUAAGAAAUGUUGUAAUUCCCAUUUAAUCAGCAUUUUGUUGAGAUUUACAACAAGAACUUAAACGGUUU-
........((((((..((((.(((.(((((.(((....)))--.)))))......((((((((.((........(((((.....))))))).)))))))).))).)))).))))))- ( -22.70)
>DroSec_CAF1 11587 114 - 1
GUGCAUCAAAAGCGCAUUAAAUUCAAUUAGAUAUAUGCAUA--GCUGAUAAGAAAUGUUGUAAUUCCCAUUUAAUCGGCAUUUUGUUGAGAUUUACAACAAGAAUUUAAACAAUUC-
((((.......)))).((((((((.(((((.(((....)))--.)))))......((((((((.((........(((((.....))))))).)))))))).)))))))).......- ( -24.20)
>DroSim_CAF1 12111 114 - 1
GUGCAUCAAAAGCGCAUUAAAUUCAAUUAGAUAUAUGCAUA--GCUGAUAAGAAAUGUUGUAAUUCCCAUUUAAUCGGCAUUUUGUUGAGAUUUACAACAAGAAUUUAAACAAUUC-
((((.......)))).((((((((.(((((.(((....)))--.)))))......((((((((.((........(((((.....))))))).)))))))).)))))))).......- ( -24.20)
>DroEre_CAF1 12730 117 - 1
GUGAAUCAAAAUCGCAUUAGGUUCAAUUAGAUAUACUCGUACCCCUGAUAAUAAAUUUUGCAAUUUCCAUUUAAUCAGCAUUUGGUUGAGAUCUACAACAAGAACUUAAACAGCCUA
((((.......)))).((((((((...(((((...((((.(((.(((((..(((((............)))))))))).....))))))))))))......))))))))........ ( -18.40)
>DroYak_CAF1 10800 107 - 1
----AUCAAAACCGCAUUAAAUUCAAUUGGAUAUAC------ACCUGAUAACAAAUGUUGUAAUUUUCAUUUAAUCAGCAUUUGGUUGAGAUUUACAACAAGAACUUAAACGACCUA
----........((..((((.(((.((..(......------..)..))......((((((((.(((((.((((.......)))).))))).)))))))).))).)))).))..... ( -17.30)
>consensus
GUGCAUCAAAACCGCAUUAAAUUCAAUUAGAUAUAUGCAUA__GCUGAUAAGAAAUGUUGUAAUUCCCAUUUAAUCAGCAUUUUGUUGAGAUUUACAACAAGAACUUAAACAAUUU_
((((.......)))).((((((((.(((((..............)))))......((((((((.((........(((((.....))))))).)))))))).))))))))........ (-15.40 = -16.28 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:59 2006