Locus 7131

Sequence ID X_DroMel_CAF1
Location 17,902,203 – 17,902,311
Length 108
Max. P 0.698887
window11649

overview

Window 9

Location 17,902,203 – 17,902,311
Length 108
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 74.83
Mean single sequence MFE -38.22
Consensus MFE -25.23
Energy contribution -24.96
Covariance contribution -0.27
Combinations/Pair 1.40
Mean z-score -1.21
Structure conservation index 0.66
SVM decision value 0.35
SVM RNA-class probability 0.698887
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17902203 108 + 22224390
G------------AAACAGAAAGCUGGAUGGACUGCCAGGGAGCUUGGAUCUACCUGGAGGCCAUCUUUGCCUCGGCGGAUAUUCAGCGACAGCUGCCCCACGAGGCCAAGAUGUUCUUC
.------------............((.((((...(((((...))))).)))))).((((..((((((.((((((..((.....((((....))))..)).)))))).))))))..)))) ( -39.20)
>DroPse_CAF1 2557 120 + 1
CUCUCUCUCUCUCCUCUAGAGGCCUGGAUGGACUGUCAGGGUGCAUGGAUCUACCUGGAGGCUAUUUUCGCCUCGGCGGAUAUUCAGCGCCAGUUGCCCCAAGAGGCCAAGAUGUUCUUU
.......(((..(((((.(.(((((((.(((((((((.(((((........))))).(((((.......))))))))))...))))...))))..))).).)))))...)))........ ( -38.60)
>DroGri_CAF1 3067 104 + 1
----------------CAGAGGCUUGGUUGGACUGCCAGGGCUCUUGGGUCUACUUGGAGGCAAUCUUUGCCUCGGCCGACAUACAGCGCCAGCUGCCCAAUGAGGCCAAGAUGUUCAAC
----------------....(((((.(((((.(.(((.(((((....))))).....((((((.....))))))))).).....((((....)))).))))).)))))............ ( -41.10)
>DroWil_CAF1 2542 109 + 1
U-----------UUUUCAGAGGCUUGGAUGGAUUGCCAAGGUGCCUGGAUCUAUUUGGAGGCAAUUUUCGCCUCGGCUGAUAUACAACGUCAAUUGCCAAAUGAGGCGAAAAUGUUUUUU
.-----------..(((((.(.(((((........))))).)..))))).......(((((((.(((((((((((((((((.......))))...)))....))))))))))))))))). ( -34.00)
>DroMoj_CAF1 4051 112 + 1
--------UCGGACCUUAGAGGCUUGGAUGGAUUGCCAGGGCGCCUGGAUCUAUUUGGAAGCCAUCUUUGCCUCGGCUGACAUACAACGGCAGCUGCCCCACGAAGCCAAAAUGUUCAAU
--------..((((....(((((..((((((....(((((...))))).(((....)))..))))))..)))))((((..........(((....)))......)))).....))))... ( -39.19)
>DroPer_CAF1 2563 120 + 1
CUCUCUCUCUCUCCUCUAGAGGCCUGGAUGGACUGUCAGGGUGCAUGGAUCUACUUGGAGGCUAUCUUCGCCUCGGCGGAUAUUCAGCGCCAGUUGCCCAACGAGGCCAAGAUGUUCUUU
.......(((..((((....((((((((((..(((((..((((.((((.(((....)))..))))...))))..))))).))))))).))).(((....)))))))...)))........ ( -37.20)
>consensus
_____________CUCCAGAGGCCUGGAUGGACUGCCAGGGUGCAUGGAUCUACUUGGAGGCAAUCUUCGCCUCGGCGGAUAUACAGCGCCAGCUGCCCAACGAGGCCAAGAUGUUCUUU
..................(((((..((((((.((.(((((.............))))).))))))))..)))))(((.......((((....)))).........)))............ (-25.23 = -24.96 +  -0.27)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:56 2006