Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,892,263 – 17,892,361 |
Length | 98 |
Max. P | 0.569898 |
Location | 17,892,263 – 17,892,361 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 76.10 |
Mean single sequence MFE | -18.15 |
Consensus MFE | -9.75 |
Energy contribution | -9.38 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.29 |
Mean z-score | -1.91 |
Structure conservation index | 0.54 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.569898 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17892263 98 - 22224390 ----------CCACUCCCAUUCCUCUCAUCUGCUCUUC----UUCACUCGCUUAUUGUGAGUACACUGAGAAUACUUU-U-UUGGUUUUUUAGGCAUGAAGCU-UAAGAGAUAUU ----------......................((((((----(((((((((.....))))))...(((((((.(((..-.-..))))))))))....))))..-.)))))..... ( -20.70) >DroSec_CAF1 156306 101 - 1 ----------CCACUUCCAUUCC--UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUUAU-UUGGUUUUUCAGGCUUGAAACU-UAAGAGAUAUU ----------.............--.......(((((.....(((((((((.....))))))...(((((((.(((....-..))))))))))....)))...-.)))))..... ( -19.50) >DroEre_CAF1 151865 106 - 1 -----UCACCCUACUCCCGUUCC--UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACCGAGAAUAUUAU-U-UUGGUUUUUCAAGUUAAAAUCUCUUAGGAAUAUA -----.............(((((--(...........(((((..............)))))......((((...(((.-(-((((....))))).)))..))))..))))))... ( -18.34) >DroYak_CAF1 152599 110 - 1 CCCAUUCCCCCUACUC--AUUCC--CCAUCUACUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUU-UGUUGGAUUUUUAAAUUAUUUUCUCUUAGGAUUAUU .........((((...--.....--............(((((..............)))))......(((((....((-((.........)))).....))))).))))...... ( -14.04) >consensus __________CCACUCCCAUUCC__UCAUCUGCUCUUCCCACUUCACUCGCUUAUUGUGGGUACACUGAGAAUACUUU_U_UUGGUUUUUCAAGCUAGAAUCU_UAAGAAAUAUU ..........................................(((((((((.....))))))...(((((((..(........)..)))))))..............)))..... ( -9.75 = -9.38 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:53 2006