Locus 7127

Sequence ID X_DroMel_CAF1
Location 17,884,992 – 17,885,091
Length 99
Max. P 0.623899
window11640

overview

Window 0

Location 17,884,992 – 17,885,091
Length 99
Sequences 3
Columns 109
Reading direction forward
Mean pairwise identity 81.70
Mean single sequence MFE -20.83
Consensus MFE -17.61
Energy contribution -17.50
Covariance contribution -0.11
Combinations/Pair 1.09
Mean z-score -1.29
Structure conservation index 0.85
SVM decision value 0.18
SVM RNA-class probability 0.623899
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17884992 99 + 22224390
----------AAGUAUGCAACGAUUGUUUUCUAUCUGACUGUCAACAUGCAGUAUUACUAUAGCAUACUUUUGCACACUUUUUACAUGAUUAAAUGAAGAGCAAUGACA
----------((((((((...(((........)))..(((((......))))).........))))))))((((.....((((.(((......)))))))))))..... ( -17.10)
>DroSec_CAF1 148960 99 + 1
CGCUGUCUAAAAGUAUGCAACGAUGGUUUUCUAUCUGACUGUCAACGUGCAGUAUUUUUAUAGCAUACGUUUACACACUUUUUACAUGAA----UAAGGAGCA------
.(((((.((((.((((((...(((((....)))))..(((((......))))).........)))))).)))).)).((((.........----.))))))).------ ( -22.70)
>DroSim_CAF1 127597 99 + 1
CGCUGUCUAAAAGUAUGCAACGAUGGUUUUCUAUCUGACUGUCAACGUGCAGUAUUUUUAUAGCAUACGUUUACACACUUUUUACAUGAA----UAAGGAGCA------
.(((((.((((.((((((...(((((....)))))..(((((......))))).........)))))).)))).)).((((.........----.))))))).------ ( -22.70)
>consensus
CGCUGUCUAAAAGUAUGCAACGAUGGUUUUCUAUCUGACUGUCAACGUGCAGUAUUUUUAUAGCAUACGUUUACACACUUUUUACAUGAA____UAAGGAGCA______
............((((((...(((((....)))))..(((((......))))).........)))))).........(((((((..........)))))))........ (-17.61 = -17.50 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:48 2006