Locus 7126

Sequence ID X_DroMel_CAF1
Location 17,884,127 – 17,884,218
Length 91
Max. P 0.996576
window11639

overview

Window 9

Location 17,884,127 – 17,884,218
Length 91
Sequences 5
Columns 94
Reading direction reverse
Mean pairwise identity 88.72
Mean single sequence MFE -26.42
Consensus MFE -21.22
Energy contribution -21.26
Covariance contribution 0.04
Combinations/Pair 1.05
Mean z-score -2.95
Structure conservation index 0.80
SVM decision value 2.72
SVM RNA-class probability 0.996576
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17884127 91 - 22224390
GGGAAACGGGUAUCGUUUGCAGGUGUCGAAACCGGAAACGGAAACAAAGUUCACACUUGCCUUCCGACCACCCAACCACAGCCAAAA---AAAA
.(....)((((.(((...((((((((.(((.(((....)))........)))))))))))....)))..))))..............---.... ( -28.00)
>DroSec_CAF1 148078 91 - 1
GGGAAACGGGUAUCGUUUGCAGGUGUCGAAACCGGAAACGGAAACAAAGUUCACACUUGCCUUCCGACCACCCCACCACAGCCAAAA---AAAA
.(....)((((.(((...((((((((.(((.(((....)))........)))))))))))....)))..))))..............---.... ( -27.10)
>DroSim_CAF1 126716 94 - 1
GGGAAACGGGUAUCGUUUGCAGGUGUCGAAACCGGAAACGGAAACAAAGUUCACACUUGCCUUCCGACCACCCCACCACAGCCAAAAAAAAAAA
.(....)((((.(((...((((((((.(((.(((....)))........)))))))))))....)))..))))..................... ( -27.10)
>DroEre_CAF1 143958 79 - 1
GGGAAGCGGGUAUCGUUUGCAGGUGUCGAAACCGGAAGCGGAAGCAACGUUCACACUUGCCUUCCGACCAA------------AAAA---AAAA
.(((((((.....))...((((((((.(((..((...((....))..))))))))))))))))))......------------....---.... ( -23.30)
>DroYak_CAF1 143551 91 - 1
GGGAAACGGGCAUCGUUUGCAGGUGUCGAAAACGGAAACGGAAACAAAGUUCACACUUGCCUUCCGACCACCACACCGCAUCCACAA---AAAA
.(((..((((((.....))).((((((......(....)((((...((((....))))...)))))).))))...)))..)))....---.... ( -26.60)
>consensus
GGGAAACGGGUAUCGUUUGCAGGUGUCGAAACCGGAAACGGAAACAAAGUUCACACUUGCCUUCCGACCACCCCACCACAGCCAAAA___AAAA
((((((((.....)))))((((((((.(((.(((....)))........)))))))))))..)))............................. (-21.22 = -21.26 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:47 2006