Locus 7125

Sequence ID X_DroMel_CAF1
Location 17,877,484 – 17,877,581
Length 97
Max. P 0.957902
window11638

overview

Window 8

Location 17,877,484 – 17,877,581
Length 97
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 86.48
Mean single sequence MFE -28.32
Consensus MFE -22.28
Energy contribution -22.12
Covariance contribution -0.16
Combinations/Pair 1.12
Mean z-score -2.29
Structure conservation index 0.79
SVM decision value 1.48
SVM RNA-class probability 0.957902
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17877484 97 + 22224390
CUCCCCAAAGUCGCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUC---------------------CGGAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAACU
.......(((.(((((......))))).)))........((((((..((((....---------------------)))).((((.....))))......))))))....--........ ( -28.50)
>DroSec_CAF1 141116 97 + 1
CUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUC---------------------CGGAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAACU
...............((((....((((......))))..((((((..((((....---------------------)))).((((.....))))......))))))..))--))...... ( -27.10)
>DroSim_CAF1 120052 97 + 1
CUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUC---------------------CGGAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU--ACUCAACU
...............((((....((((......))))..((((((..((((....---------------------)))).((((.....))))......))))))..))--))...... ( -27.10)
>DroEre_CAF1 137576 103 + 1
CUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUCCG---------------AAUCCGGAAUCCGGAAUAUGCAAUUCCCAUAGCCAUCU--ACUCAGCU
...............(((((...((((......))))...((.(((.((((..((((---------------....))))...)))).)))))..........)))))..--........ ( -25.40)
>DroYak_CAF1 136978 120 + 1
CUCCCCAAGGUCUCCGUGGCAUCGGUGUCUUCUCACCUCGGCUGUAAUCCGAAUCCGCUAUCCGGAAUCCAGAGUCCAGAGUCCGGAAUAUGGAAUUCCCAUGGCCAUCUCAACUCAACU
........((..((((((((...((((......))))((((.......))))....))))..))))..)).((((...(((...((..(((((.....))))).))..))).)))).... ( -33.50)
>consensus
CUCCCCAAAGUCCCCGUGGCAUCGGUGUCUUCUCACCUCGGCCGUAAUCCGAAUC_____________________CGGAAUCCAGAAUAUGGAAUUCCCAUGGCCAUCU__ACUCAACU
........(((....(((((...((((......))))((((.......)))).........................((((((((.....))).)))))....)))))....)))..... (-22.28 = -22.12 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:46 2006