Locus 7124

Sequence ID X_DroMel_CAF1
Location 17,876,427 – 17,876,524
Length 97
Max. P 0.742037
window11637

overview

Window 7

Location 17,876,427 – 17,876,524
Length 97
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 73.82
Mean single sequence MFE -30.01
Consensus MFE -18.61
Energy contribution -19.36
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -1.67
Structure conservation index 0.62
SVM decision value 0.45
SVM RNA-class probability 0.742037
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17876427 97 + 22224390
UGGUCUAGAGGACACCAACUGGCGGCCAAAGGACGAUAUUAAACGGCAUGUCCUGUGGCUGCCCA-----A------UACUCUUGUGGGGCAAGUGCAAUAAAUUACC
((.((((.((((........((((((((.((((((.............)))))).))))))))..-----.------...)))).)))).))................ ( -30.66)
>DroSec_CAF1 140068 97 + 1
UGGUCUAGGGGAUAACAACUGGCGGCCAUAGGACGAUAUUAAGCGGCAUGUCCUGUGGCUGCCCA-----A------UACUCUUGUGGGGCAAGUGCAAUAAAUUACC
((.((((.((((........(((((((((((((((.............)))))))))))))))..-----.------...)))).)))).))................ ( -34.66)
>DroEre_CAF1 136621 108 + 1
CGGUCUGGGGUAUACCAAGUAGCGGCCAAAGGACCUCUUUAUAAGGCAUGUCCUGUGGCUGCCCAGCCCAAUACUCGUACUCUCGUCGGGCAAGUGCAAUAAAUAACU
.((.((((((....)).....(((((((.(((((..(((....)))...))))).))))))))))).)).......(((((((.....))..)))))........... ( -35.50)
>DroYak_CAF1 135978 80 + 1
UGGUCUAUUGGAUACCAACUAGCGGCCAAAGGACGAUAUUAUAAGGCAUGUCCUGCGGCUGCC----------------------------AAAUGCAAUACAUAACU
((((.........))))....((((((..((((((.............))))))..)))))).----------------------------................. ( -19.22)
>consensus
UGGUCUAGGGGAUACCAACUAGCGGCCAAAGGACGAUAUUAAAAGGCAUGUCCUGUGGCUGCCCA_____A______UACUCUUGUGGGGCAAGUGCAAUAAAUAACC
....................((((((((.(((((...............))))).))))))))............................................. (-18.61 = -19.36 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:45 2006