Locus 7121

Sequence ID X_DroMel_CAF1
Location 17,868,275 – 17,868,367
Length 92
Max. P 0.994716
window11628

overview

Window 8

Location 17,868,275 – 17,868,367
Length 92
Sequences 3
Columns 118
Reading direction forward
Mean pairwise identity 81.92
Mean single sequence MFE -26.27
Consensus MFE -22.27
Energy contribution -22.93
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -3.07
Structure conservation index 0.85
SVM decision value 2.50
SVM RNA-class probability 0.994716
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17868275 92 + 22224390
UUAAAUAGGGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAGGCUUAAGUCCGGGAAACUUGACGUAACAAA--------------------------UAAAAGUCUCAG
.........((((((((...(((((((...)))))))..)))))))).((((((..(((.((....)).)))........--------------------------...))))))... ( -23.22)
>DroSec_CAF1 125703 118 + 1
UUAAAUGGGGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAG
....(((((((((((((...(((((((...)))))))..))))))))...(.(((((((..(....)..))))))))....................)))))................ ( -27.80)
>DroSim_CAF1 102863 118 + 1
UUAAAUGGGGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAG
....(((((((((((((...(((((((...)))))))..))))))))...(.(((((((..(....)..))))))))....................)))))................ ( -27.80)
>consensus
UUAAAUGGGGUUUGUCUUACGAAUUUGCUACAAAUUCCUAGGCAAACAAAGCUUACGUCCUGACAACUUGACGUAACAAAUUUUGUUAAUAUUCAAACCCAUCAAUUAAAAGUCUCAG
.....((((((((((((...(((((((...)))))))..))))))))...(.(((((((..(....)..))))))))....................................)))). (-22.27 = -22.93 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:38 2006