Locus 7120

Sequence ID X_DroMel_CAF1
Location 17,867,138 – 17,867,235
Length 97
Max. P 0.916436
window11627

overview

Window 7

Location 17,867,138 – 17,867,235
Length 97
Sequences 3
Columns 97
Reading direction reverse
Mean pairwise identity 90.18
Mean single sequence MFE -21.87
Consensus MFE -20.40
Energy contribution -20.40
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.07
Structure conservation index 0.93
SVM decision value 1.11
SVM RNA-class probability 0.916436
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17867138 97 - 22224390
AAAAUGGAAAUAUUUGCUGCGCAUAAUUAUAGCCACUUAAAUUAUGGUCUAAAAGCCGUAAGCGUUUCGGUGGUAAAGUAUUUGCGCAAAUAGUUGU
..........(((((((.(((.(((......((((((.((((((((((......))))))...)))).))))))....))).))))))))))..... ( -24.80)
>DroSec_CAF1 124570 91 - 1
GAGAU----AUAUUUGCUUUGCAUAAUUAUAGCCACUUAAAUUAUGGUUUAAAAGCCGUAAGCGUUUCGGUGGUAAAGUAUUUUCGCAAAUAAUA--
.....----.(((((((..............((((((.(((((((((((....)))))))...)))).))))))...(......))))))))...-- ( -20.40)
>DroSim_CAF1 101737 91 - 1
GAGAU----AUAUUUGCUUUGCAUAAUUAUAGCCACUUAAAUUAUGGUUUAAAAGCCGUAAGCGUUUCGGUGGUAAAGUAUUUUCGCAAAUAAUA--
.....----.(((((((..............((((((.(((((((((((....)))))))...)))).))))))...(......))))))))...-- ( -20.40)
>consensus
GAGAU____AUAUUUGCUUUGCAUAAUUAUAGCCACUUAAAUUAUGGUUUAAAAGCCGUAAGCGUUUCGGUGGUAAAGUAUUUUCGCAAAUAAUA__
..........(((((((..............((((((.((((((((((......))))))...)))).))))))...(......))))))))..... (-20.40 = -20.40 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:37 2006