Locus 7119

Sequence ID X_DroMel_CAF1
Location 17,866,112 – 17,866,222
Length 110
Max. P 0.938528
window11626

overview

Window 6

Location 17,866,112 – 17,866,222
Length 110
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 93.06
Mean single sequence MFE -34.24
Consensus MFE -28.26
Energy contribution -29.46
Covariance contribution 1.20
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.83
SVM decision value 1.27
SVM RNA-class probability 0.938528
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17866112 110 + 22224390
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCGGUUAUGGUAAGUCCUCUUAUCCAACUCAUGCUGCUAUCAAUUCAAUUUUGUGCCGGCAGUCGGUGCUCAUGG
(((((.(((((.((....)))))))(((((((((...((((..((((((....)))))).))))......((...(((.......))).)).))))))))).)))))... ( -32.20)
>DroSec_CAF1 123560 110 + 1
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCGGUUAUGGUAAGUCCUCUUAUCCAGCUCAUGCUGCUAUCAAUUCAAUUUUGUCCCGGCAGUCGGUGCUCAUGG
(((((.(((((.((....)))))))((((((((...(((....((((((....))))))((((....))))...................))))))))))).)))))... ( -35.90)
>DroSim_CAF1 100715 110 + 1
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCGGUUAUGGUAAGUCCUCUUAUCCAGCUCAUGCUGCUAUCAAUUCAAUUUUGUCCCGGCAGUCGGUGCUCAUGG
(((((.(((((.((....)))))))((((((((...(((....((((((....))))))((((....))))...................))))))))))).)))))... ( -35.90)
>DroEre_CAF1 126661 105 + 1
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCAGUUAUGGUAAGACCUCUUAUCCAGCUCAUGCUGCUUCCAAUUCAAUUUGGUGCCGGCAGUCGGUGCU-----
..(((.(((((.((....)))))))(((((((((..((.....((((((....))))))((((....))))...((((......))))))..))))))))).)))----- ( -34.40)
>DroYak_CAF1 125467 105 + 1
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCGGUUAUGGCAAGUCCUCUUAUCCAGCUCAUGCUGCUUCCAAUUCAAUUUUGUGCCGGCCGUCGUUGCU-----
..((((((((((..(((((((((....(((((((.........))).))))........((((....))))...)))..))))))))).))))))).........----- ( -32.80)
>consensus
UGGGCUGGCCAAUCAAUUGAUGGUCCUGACUGCUUUCGGUUAUGGUAAGUCCUCUUAUCCAGCUCAUGCUGCUAUCAAUUCAAUUUUGUGCCGGCAGUCGGUGCUCAUGG
.((((.(((((.((....)))))))(((((((((.........((((((....))))))((((....)))).....................))))))))).)))).... (-28.26 = -29.46 +   1.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:36 2006