Locus 7118

Sequence ID X_DroMel_CAF1
Location 17,864,258 – 17,864,365
Length 107
Max. P 0.582972
window11625

overview

Window 5

Location 17,864,258 – 17,864,365
Length 107
Sequences 6
Columns 113
Reading direction reverse
Mean pairwise identity 80.97
Mean single sequence MFE -23.34
Consensus MFE -11.65
Energy contribution -12.15
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -2.36
Structure conservation index 0.50
SVM decision value 0.10
SVM RNA-class probability 0.582972
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17864258 107 - 22224390
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCCGCUGGCAUUUGGCCAAAAACUACAAA-----AAAUCCACAAUGCGAGCAAAC-AGAAAAGUACGGAAUAUAUGUA
.........((((((......))))))......((((((((.((((((((..............-----....))).))))).)))..((-......))..)))))....... ( -25.27)
>DroSec_CAF1 121759 106 - 1
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCCGCUGGCAUUUGGCCAA-AACUACAAA-----AAAUCCACAGUGCGAGCAAAC-AGAAAAGUACGGAAUACAUGUA
.........((((((......))))))......((((((((.((((((((....-.........-----....))).))))).)))..((-......))..)))))....... ( -25.33)
>DroSim_CAF1 98907 106 - 1
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCCGCUGGCAUUUGGCCAA-AACUACAAA-----AAAUCCACAGUGCUAGCAUAC-AGAAAUGUACGGAAUACAUGUA
.........((((((......))))))......(((((((((((((((((....-.........-----....))).))))))))).(((-(....)))).)))))....... ( -32.03)
>DroEre_CAF1 125134 110 - 1
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCGGCUGGCAUUUGGCCAA-AACUACAAAAAAAAAAAUCCAAAGUGAGAGCAAAC-AG-AAAGUACGAAAAACAUAUA
..........(((.(((((((((.((((....)))).))))(((.....)))..-...............)))))...((....))...)-))-................... ( -23.00)
>DroYak_CAF1 123653 105 - 1
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCCGCUGGCACUUGGCCAA-AACUACAAA-----AAAUCCAAACUGAGAGCAAACCAGAAAAGUAAGGAA--UAUACA
.........((((((......))))))......(((((..((((.....)))).-.........-----.........(((.(......))))........))))--)..... ( -20.50)
>DroAna_CAF1 135299 88 - 1
---UAGAAAUCUGAGGAUUAGGGCAGUCAAACGAUUUUGUUGGCAUUUGGCCAAAAAAUACCAA-----AAA---------------AAG-AAAAAAGGAAGGCAGCUA-GGA
---....((((....))))..(((.(((.....(((((.(((((.....)))))))))).((..-----...---------------...-......))..))).))).-... ( -13.94)
>consensus
GUCUAUAAAACUGGGGAUUAGCCCAGUCAAACGAUUCCGCUGGCAUUUGGCCAA_AACUACAAA_____AAAUCCACAGUGCGAGCAAAC_AGAAAAGUACGGAAUACAUGUA
.........((((((......)))))).............((((.....))))............................................................ (-11.65 = -12.15 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:35 2006