Locus 7116

Sequence ID X_DroMel_CAF1
Location 17,860,420 – 17,860,540
Length 120
Max. P 0.532004
window11623

overview

Window 3

Location 17,860,420 – 17,860,540
Length 120
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.94
Mean single sequence MFE -41.49
Consensus MFE -27.79
Energy contribution -28.52
Covariance contribution 0.73
Combinations/Pair 1.37
Mean z-score -1.34
Structure conservation index 0.67
SVM decision value -0.00
SVM RNA-class probability 0.532004
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17860420 120 + 22224390
ACUCGAGUGUUUGGUGGAGGCAUUCCCCGAAGCCAUUAGGUAUUGGGAACGUGCCUACGACGGCAAGAUCCUCGAUCCCAGCGACAAGUACGGCAUUGAAUCGUACCCAGAGGGGUGAGU
(((((..(.((((((((((((((..(((((.(((....))).)))))...)))))).(((.((......)))))...))).......((((((.......))))))))))).)..))))) ( -40.60)
>DroVir_CAF1 172075 120 + 1
AUUGGAAUGCCAGGUGGAGGCCUUCCCGGAGGCCAUACGCUACUGGGAGCGCGCCUACGAUGGCAAGAUUCUCGAUCCAAGUGAUAAGUAUCGCAUUGAAUCAUAUCCAGACGGGUGAGU
.(((((.(((((.((((..((.(((((((.(((.....))).))))))).))..))))..)))))........(((.((((((((....))))).))).)))...))))).......... ( -42.50)
>DroGri_CAF1 147204 120 + 1
UUUGGAGUGCCAGGUGGAAGCUUUCCCGGAGGCCAUACGCUACUGGGAGCGGGCCUACGAUGGCAAAAUUCUCGAGCCGAGUGAUAAAUAUCGCAUCGAGUCCUAUCCAGAUGGGUAUGU
...(((.(((((.((((..((((((((((.(((.....))).)))))))..)))))))..))))).....(((((.....(((((....))))).))))))))(((((....)))))... ( -42.20)
>DroWil_CAF1 151219 120 + 1
UCUGGAAUGUCAGGUUGAGGCCUUCCCCGAGGCGAUACGCUAUUGGGAACGGGCAUACGAUGGCAAAAUAUUAGAUCCCAGCGAUAAAUAUCGCAUCGAAUCGUAUCCCGAUGGGUGGGU
(((((....))))).....((((..(((((((((...)))).)))))..((((.(((((((((..............)).(((((....))))).....)))))))))))..)))).... ( -35.94)
>DroMoj_CAF1 187618 120 + 1
CCUGGAGUGCCAGGUCGAAGCCUUUCCGGAGGCUAUACGGUACUGGGAGCGGGCCUACGAUGGCAAAAUAUUGGAUCCAAGUGAUAAGUAUCGCAUUGAGUCCUAUCCAGAUGGGUAAGU
.(((((.(((((..(((.((((((....))))))....(((.(((....))))))..)))))))).......(((..((((((((....))))).)))..)))..))))).......... ( -41.30)
>DroAna_CAF1 131582 120 + 1
UUUGGAGUGCCAAGUGGAGGCCUUCCCGGAGGCCAUUCGUUACUGGGAAAGGGCCUACGAUGGCAAGAUCCUAGAUCCCAGCGACAAAUACGGCAUAGAAUCUUAUCCAGAUGGGUAGGU
......(((((....(((((((((....)))))).)))((..((((((.((((((......))).....)))...))))))..))......))))).....(((((((....))))))). ( -46.40)
>consensus
UCUGGAGUGCCAGGUGGAGGCCUUCCCGGAGGCCAUACGCUACUGGGAACGGGCCUACGAUGGCAAAAUACUCGAUCCCAGCGAUAAAUAUCGCAUUGAAUCCUAUCCAGAUGGGUAAGU
...(((.(((((.((((..((((((((((.(((.....))).))))))..))))))))..)))))...............(((((....)))))......)))(((((....)))))... (-27.79 = -28.52 +   0.73)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:33 2006