Locus 7115

Sequence ID X_DroMel_CAF1
Location 17,860,233 – 17,860,327
Length 94
Max. P 0.903790
window11622

overview

Window 2

Location 17,860,233 – 17,860,327
Length 94
Sequences 6
Columns 94
Reading direction reverse
Mean pairwise identity 77.85
Mean single sequence MFE -27.03
Consensus MFE -18.95
Energy contribution -18.40
Covariance contribution -0.55
Combinations/Pair 1.21
Mean z-score -1.68
Structure conservation index 0.70
SVM decision value 1.03
SVM RNA-class probability 0.903790
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17860233 94 - 22224390
AAUCUACAAACUUUGCUCGCCACACACUUACAUUGCACUUCCACGAGGUAGGUGGCAUUUGCCACGGGAGCGAUGCCAUUGUUGGCAAAACAGG
............((((((.((...............(((((...)))))..(((((....)))))))))))))(((((....)))))....... ( -29.10)
>DroPse_CAF1 132431 86 - 1
ACA-----G---GUACAGGCAUCUCUCUUACAGUGCACUUCCACGAUAAAGGUCGCAUUGGCGACGGGAGCAAUCCCAUUGUUGGCAUAGCAUG
...-----.---(((.(((......)))))).((((....(((((((....(((((....)))))((((....)))))))).)))....)))). ( -25.20)
>DroSec_CAF1 117742 94 - 1
AAUCUUCAAACUUUCCUUGCCACACACUUACAUUGCACUUCCACGAGAUAGGUGGCAUUGGCCACGGGAGCGAUGCCAUUGUUGGCAAAACAGG
................((((((.(((....((((((..((((.(......)(((((....)))))))))))))))....)))))))))...... ( -27.20)
>DroSim_CAF1 94871 94 - 1
AAUCUUCAAACUUUCCUUGCCACACACUUACAUUGCACUUCCACGAGGUAGGUGGCAUUGGCCACGGGAGCGAUGCCAUUGUUGGCAAAACAGG
................((((((.(((....(((((((((((...)))))..(((((....)))))....))))))....)))))))))...... ( -27.80)
>DroWil_CAF1 150992 83 - 1
AAUCCU-----------UCACUCUUACUUACAGUGCACUUCCACAAGGAAGGUGGCAUUGGCCACUGGAGCUAUGCCAUUGUUGGCAAAACACG
......-----------...((((......((((((.(((((....)))))...))))))......))))...(((((....)))))....... ( -26.60)
>DroYak_CAF1 119630 79 - 1
AAU---------------GGCAUACACUUACAUUGCACUUCCACGAGGUAGGUGGCAUUGGCCACGGGAGCGAUGCCAUUGUUGGCGUAGCAGG
..(---------------(((...(((((((.(((........))).)))))))......)))).....((.((((((....)))))).))... ( -26.30)
>consensus
AAUCUU__A___UU_CUUGCCACACACUUACAUUGCACUUCCACGAGGUAGGUGGCAUUGGCCACGGGAGCGAUGCCAUUGUUGGCAAAACAGG
................................(((..(((((.(......)(((((....))))))))))...(((((....)))))...))). (-18.95 = -18.40 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:32 2006