Locus 7114

Sequence ID	X_DroMel_CAF1
Location	17,859,751 – 17,859,849
Length	98
Max. P	0.897572

overview

Window 0

Location	17,859,751 – 17,859,849
Length	98
Sequences	6
Columns	103
Reading direction	forward
Mean pairwise identity	80.70
Mean single sequence MFE	-40.45
Consensus MFE	-26.83
Energy contribution	-28.83
Covariance contribution	2.00
Combinations/Pair	1.08
Mean z-score	-1.86
Structure conservation index	0.66
SVM decision value	0.56
SVM RNA-class probability	0.783161
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17859751 98 + 22224390
-----CUUCUGGACAGGCAUUGCGGGUCCACGUGGUCGACCUGGCAAGCCGGGAACCAAUGGCAUACCCGGAGUGCCCGGCAUCAAUGCCUGGAAGCUGCAAU
-----(((((.....((((((.((((((((..((((...(((((....))))).)))).)))...))))).)))))).((((....)))).)))))....... ( -42.40)
>DroVir_CAF1 169761 103 + 1
CCCUGCUCAAGCACAGGCAUCGCCGGGCCACGCGGACGUCCUGGCAAGCCGGGCACCAAUGGCACACCCGGCGUGCCGGGCAUCAACACCUGGAAGAUGCAAU
...(((....)))...(((((.(((((((....))..(.(((((((.((((((..((...))....)))))).)))))))).......)))))..)))))... ( -44.00)
>DroPse_CAF1 131998 97 + 1
------CUUUCCACAGGCAUUGCUGGUCCGCGCGGACGUCCUGGAAAGCCGGGCACCAACGGUACACCCGGAGUGCCCGGCAUCAACGCCUGGAAGAUGCAGU
------.((((((..(((.(((...((((....))))..........(((((((((...(((.....)))..)))))))))..))).)))))))))....... ( -42.10)
>DroGri_CAF1 146462 98 + 1
-----CUUAAUUGCAGGCAUUGCUGGUCCACGCGGACGUCCGGGCAAGCCAGGCACCAAUGGCACACCGGGUGUGCCCGGCAUCAAUACGUGGAAAAUGCAGU
-----....(((((((((...)))..((((((..((.(.((((((..((((........))))((((...))))))))))).))....))))))...)))))) ( -37.90)
>DroAna_CAF1 130627 97 + 1
------UUUCCUACAGGCAUCGCAGGACCUCGCGGUCGUCCUGGCAAGCCCGGCACCAACGGCACUCCCGGAGUCCCCGGAAUCAAUGCCUGGAAGAUGCAGU
------..........(((((....((((....)))).(((.((((.(((.(.......))))....((((.....))))......)))).))).)))))... ( -34.00)
>DroPer_CAF1 133856 97 + 1
------CUUUCCACAGGCAUUGCUGGUCCGCGCGGACGUCCUGGAAAGCCGGGCACCAACGGCACGCCCGGAGUUCCCGGCAUCAAUGCAUGGAAAAUGCAGU
------.((((((...((((((.((((((....))))..((.((((..((((((...........))))))..)))).)))).)))))).))))))....... ( -42.30)
>consensus
______UUUUCCACAGGCAUUGCUGGUCCACGCGGACGUCCUGGCAAGCCGGGCACCAACGGCACACCCGGAGUGCCCGGCAUCAAUGCCUGGAAGAUGCAGU
.............(((((((((...((((....))))..((.((((..(((((..((...))....)))))..)))).))...)))))))))........... (-26.83 = -28.83 +   2.00)

alignment

secondary structure

dotplot

Window 1

Location	17,859,751 – 17,859,849
Length	98
Sequences	6
Columns	103
Reading direction	reverse
Mean pairwise identity	80.70
Mean single sequence MFE	-44.42
Consensus MFE	-32.99
Energy contribution	-33.43
Covariance contribution	0.45
Combinations/Pair	1.25
Mean z-score	-2.12
Structure conservation index	0.74
SVM decision value	1.00
SVM RNA-class probability	0.897572
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17859751 98 - 22224390
AUUGCAGCUUCCAGGCAUUGAUGCCGGGCACUCCGGGUAUGCCAUUGGUUCCCGGCUUGCCAGGUCGACCACGUGGACCCGCAAUGCCUGUCCAGAAG-----
.......(((((((((((((......((((..(((((...(((...))).)))))..)))).((((.((...)).))))..)))))))))....))))----- ( -41.50)
>DroVir_CAF1 169761 103 - 1
AUUGCAUCUUCCAGGUGUUGAUGCCCGGCACGCCGGGUGUGCCAUUGGUGCCCGGCUUGCCAGGACGUCCGCGUGGCCCGGCGAUGCCUGUGCUUGAGCAGGG
(((((.....(((.(((..((((((.((((.(((((((..(((...)))))))))).)))).)).))))))).)))....))))).(((((......))))). ( -49.90)
>DroPse_CAF1 131998 97 - 1
ACUGCAUCUUCCAGGCGUUGAUGCCGGGCACUCCGGGUGUACCGUUGGUGCCCGGCUUUCCAGGACGUCCGCGCGGACCAGCAAUGCCUGUGGAAAG------
........((((((((((((..((((((((((.(((.....)))..))))))))))..........((((....))))...))))))))).)))...------ ( -47.70)
>DroGri_CAF1 146462 98 - 1
ACUGCAUUUUCCACGUAUUGAUGCCGGGCACACCCGGUGUGCCAUUGGUGCCUGGCUUGCCCGGACGUCCGCGUGGACCAGCAAUGCCUGCAAUUAAG-----
..((((...(((((((...(((((((((((...((((.(..((...))..)))))..))))))).)))).))))))).((....))..))))......----- ( -43.50)
>DroAna_CAF1 130627 97 - 1
ACUGCAUCUUCCAGGCAUUGAUUCCGGGGACUCCGGGAGUGCCGUUGGUGCCGGGCUUGCCAGGACGACCGCGAGGUCCUGCGAUGCCUGUAGGAAA------
......((((.(((((((((..(((((.((..((((.(.(......).).))))..)).)).))).((((....))))...))))))))).))))..------ ( -41.90)
>DroPer_CAF1 133856 97 - 1
ACUGCAUUUUCCAUGCAUUGAUGCCGGGAACUCCGGGCGUGCCGUUGGUGCCCGGCUUUCCAGGACGUCCGCGCGGACCAGCAAUGCCUGUGGAAAG------
.......(((((((((((((.((((.((((..((((((..(((...)))))))))..)))).))..((((....)))))).))))))..))))))).------ ( -42.00)
>consensus
ACUGCAUCUUCCAGGCAUUGAUGCCGGGCACUCCGGGUGUGCCAUUGGUGCCCGGCUUGCCAGGACGUCCGCGUGGACCAGCAAUGCCUGUGGAAAA______
...........(((((((((...((.((((..((((((..(((...)))))))))..)))).))..((((....))))...)))))))))............. (-32.99 = -33.43 +   0.45)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:31 2006