| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,856,555 – 17,856,661 |
| Length | 106 |
| Max. P | 0.569926 |
| Location | 17,856,555 – 17,856,661 |
|---|---|
| Length | 106 |
| Sequences | 3 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 81.70 |
| Mean single sequence MFE | -30.33 |
| Consensus MFE | -22.05 |
| Energy contribution | -23.00 |
| Covariance contribution | 0.95 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.59 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.569926 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17856555 106 + 22224390 GAAAUGCAAAUUAAGCGCAAAGUGCUUACAAAUGUGCGCUGUCUGCUGGGCGAUGGGCGGUACAAGUGGGCGGUCAAGUGGGCGGUCAAGAGGGCGGUCAAGUGGG .....(((...(((((((...)))))))......)))((((((..((.(.((.....)).)...))..))))))((..(((.((.((....)).)).)))..)).. ( -31.10) >DroSec_CAF1 114092 82 + 1 GAAAUGCAAAUUAAGCGCAAAGUGCUUACAAAUGUGCGCUGUCUGCUGGGCGGUGGGCAGUACAAGU------------GGGC------------GCACAAGUGGG ...........(((((((...)))))))((..(((((((((((..((....))..)))....(....------------))))------------)))))..)).. ( -28.00) >DroSim_CAF1 91218 94 + 1 GAAAUGCAAAUUAAGCGCAAAGUGCUUACAAAUGUGCGCUGUCUGCUGGGCGGUGGGCGGUACAAGUGGGCGGUCAAGUGGGC------------GCACAAGUGGG ...........(((((((...)))))))((..(((((((((((..((....))..)))....((..(((....)))..)))))------------)))))..)).. ( -31.90) >consensus GAAAUGCAAAUUAAGCGCAAAGUGCUUACAAAUGUGCGCUGUCUGCUGGGCGGUGGGCGGUACAAGUGGGCGGUCAAGUGGGC____________GCACAAGUGGG ...........(((((((...)))))))((..(((((((((((((((....))))))))))....((..((......))..))............)))))..)).. (-22.05 = -23.00 + 0.95)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:28 2006