Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,959,798 – 1,959,906 |
Length | 108 |
Max. P | 0.553629 |
Location | 1,959,798 – 1,959,906 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 84.66 |
Mean single sequence MFE | -34.16 |
Consensus MFE | -22.85 |
Energy contribution | -23.52 |
Covariance contribution | 0.67 |
Combinations/Pair | 1.19 |
Mean z-score | -2.63 |
Structure conservation index | 0.67 |
SVM decision value | 0.04 |
SVM RNA-class probability | 0.553629 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1959798 108 + 22224390 C---------UUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACACCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA .---------.........(((((............((((((....................((((((...))))))....((((......))))...))))))....))))).... ( -32.99) >DroSec_CAF1 22090 108 + 1 C---------CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGACGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA .---------.........(((((............((((((....................(.((((......)))).).((((......))))...))))))....))))).... ( -27.59) >DroSim_CAF1 2932 108 + 1 C---------CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACGCUGUCCCUCUUGGCCACCA .---------.........(((((............(((((((...................((((((...))))))....((((......))))..)))))))....))))).... ( -36.59) >DroEre_CAF1 23488 117 + 1 CCUCCUAUGCCUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGAGCCAGCUGCUCGAACAGCACGCUGUCCCUCUUGGCCAACA ...................(((((............(((((((............(((((..((((....)))))))))..((((......))))..)))))))....))))).... ( -35.59) >DroYak_CAF1 22987 117 + 1 CCAACUAUGCCUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCGCAGUUCCCAGCCGCCUUCGGCGGGGCCAGCUGCUCGAACAGCACACUGUCCCUCCUGGCCACCA ...................(((((............((((((...((((((((.((...........)).))))))))...((((......))))...))))))....))))).... ( -38.69) >DroPer_CAF1 29048 108 + 1 C---------CUCCUAUCCCGCCACACCCACCUCCUGGUCGAGCGCACCUCCCCAGUUUCCAGCGGGCCUCGGCAGCGGCACCUGCUCCACCAGCACCUUAGUGCUGCUGGCCCACA .---------........................((((..(((.....))).))))......(.(((((..((.(((((...)))))))..((((((....))))))..))))).). ( -33.50) >consensus C_________CUCCUACCCGGCCACGCCCACCUCCUGGACAGCCACCCCGCCCCAGUUCCCAGCCGCCUUCGGCGGCGCCAGCUGCUCCAACAGCACACUGUCCCUCUUGGCCACCA ...................(((((............((((((....................((((((...))))))....((((......))))...))))))....))))).... (-22.85 = -23.52 + 0.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:44 2006