Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,852,529 – 17,852,631 |
Length | 102 |
Max. P | 0.878542 |
Location | 17,852,529 – 17,852,631 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 85.60 |
Mean single sequence MFE | -25.76 |
Consensus MFE | -20.22 |
Energy contribution | -20.02 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.23 |
Mean z-score | -1.98 |
Structure conservation index | 0.78 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.878542 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17852529 102 + 22224390 GUUGUUAUCGGGUAUAAUGACCGUUACACACAUGGUUAUAAACUCGAAUCGGUUGCUUAAAAUUUCUUUCGUUUUUGGUUUGAGUACCUGCUUUGCAUUAAU ..(((...(((((...((((((((.......))))))))..(((((((((((..((..((......))..))..))))))))))))))))....)))..... ( -25.50) >DroSec_CAF1 110227 101 + 1 GUUGUUAUCGGGUAUGCUGACCGUUAAACAAACGGUUAAAAACUCGAAUCGGUUGCUAGAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA- .........((((((..((((((((.....)))))))).(((((.(((((((..(..(....)..)..))))))).)))))..))))))............- ( -26.10) >DroSim_CAF1 86139 101 + 1 GUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAAAAACUCGAAUCGGUUGCUCAAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA- .......((((((.(..(((((((.......))))))).).))))))...(((.(((((((...((....))......)))))))))).............- ( -23.80) >DroEre_CAF1 113835 101 + 1 GUCGUUAUCGGGUAUGUUGACCGUUACACUUACGGUGAUGAACUCGAAUCGGUUGACCAGAUUUUCUUUCAAUUUCGGUUCGAGUACCUACUUUCCAUUUG- .(((((((((....(((........)))....)))))))))(((((((((((((((..((.....)).)))))..))))))))))................- ( -27.50) >DroYak_CAF1 112078 100 + 1 GUCGUUAUCGGGUAUGGUGACCGUUACGCUUACGGUUAUGAACCCGAAUCGGUUG-CUAAAUUUUUUUUCCGUUUUGGUUUGAGUACCUACUUUCCAUUUA- .(((...((((((.(.((((((((.......)))))))).)))))))..)))...-...................(((...((((....)))).)))....- ( -25.90) >consensus GUUGUUAUCGGGUAUGCUGACCGUUACACACACGGUUAUAAACUCGAAUCGGUUGCUCAAAAUUUCUUUCGAUUUUGGUUUGAGUACCUACUUUCCAUUUA_ .........((((((..(((((((.......))))))).(((((.(((((((..(..........)..))))))).)))))..))))))............. (-20.22 = -20.02 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:19 2006