Locus 7108

Sequence ID X_DroMel_CAF1
Location 17,836,876 – 17,836,987
Length 111
Max. P 0.812465
window11605

overview

Window 5

Location 17,836,876 – 17,836,987
Length 111
Sequences 3
Columns 111
Reading direction forward
Mean pairwise identity 87.69
Mean single sequence MFE -27.07
Consensus MFE -20.47
Energy contribution -20.03
Covariance contribution -0.44
Combinations/Pair 1.14
Mean z-score -2.59
Structure conservation index 0.76
SVM decision value 0.65
SVM RNA-class probability 0.812465
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17836876 111 + 22224390
GGCCAAGCAAUCAGCUUAAUUGAAGGAAACUUUCAAGAGUUUCUAACACGGGGGAAACUUUUAAAUUUUACAACUUAAAACACAUUUAAGUUCUUGUUUUAAUUUAAAGGG
..((((((.....)))).......((((((((....)))))))).....))......((((((((((..((((((((((.....)))))))...)))...)))))))))). ( -24.60)
>DroSim_CAF1 67130 111 + 1
GGCCAAGCAAUCAGCUUAAUUGAAGGAAACUUUCAAGAGUUUCUAACUCGGCAGAAACUUUUAAAUUAUGCAACUUAAAGCACAUUUAAGUUCUUGUUUUAACUUAAAGGC
.(((((((.....))))..((((((....).)))))((((.....))))))).....(((((((.(((.((((((((((.....)))))))...)))..))).))))))). ( -26.10)
>DroEre_CAF1 96471 111 + 1
GGCCAAGCAAUCAGCUUAAUUAGAGGCAACUUUCAAGAGUUUCUAACUCGUGAGCAACUUGUAAGUUAUGCAAGUUAAGCCAUAUUUAAGUUCUUGCUUAAAUUUAAAGGC
.(((((((((..(((((((.((..(((....((((.((((.....)))).)))).((((((((.....))))))))..))).)).))))))).)))))).........))) ( -30.50)
>consensus
GGCCAAGCAAUCAGCUUAAUUGAAGGAAACUUUCAAGAGUUUCUAACUCGGGAGAAACUUUUAAAUUAUGCAACUUAAAACACAUUUAAGUUCUUGUUUUAAUUUAAAGGC
....((((((..(((((((.(((((....)))..((((((((((........))))))))))....................)).))))))).))))))............ (-20.47 = -20.03 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:18 2006