Locus 7106

Sequence ID X_DroMel_CAF1
Location 17,833,351 – 17,833,465
Length 114
Max. P 0.533873
window11601

overview

Window 1

Location 17,833,351 – 17,833,465
Length 114
Sequences 4
Columns 118
Reading direction reverse
Mean pairwise identity 82.10
Mean single sequence MFE -29.47
Consensus MFE -15.07
Energy contribution -16.32
Covariance contribution 1.25
Combinations/Pair 1.19
Mean z-score -2.47
Structure conservation index 0.51
SVM decision value 0.00
SVM RNA-class probability 0.533873
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17833351 114 - 22224390
CAUUUUGUG--GAAAACUACCCAA-AAAAAAAAAGGGGGACAGAGGUGCAAGUUCUGGCUAACGGAAAAUGAAGCUACCUUUGU-UGCACUGCAAAAAGAGUUUCGAAAGUCAAAAAA
..(((((..--(.......(((..-.........))).(((((((((((...(((((.....)))))......)).))))))))-)...)..))))).......(....)........ ( -27.90)
>DroSec_CAF1 90944 111 - 1
CAUUUUGGGG-GGAAACUCCCCAA-A----AAAAGGGGGACAGAGGUGCAAGUUCUGACUAACCGGAAAAUAAGCUACCUUUGU-UGCACUGCCAAAAGAGUUUUGAGAAUGAAAAAA
((((((((((-(....)))))(((-(----(.....(.(((((((((((...(((((......))))).....)).))))))))-).).((......))..)))))))))))...... ( -35.20)
>DroEre_CAF1 92932 110 - 1
CAUUUUGGGG---AAACUCGCCAAAA----AAAAGGGGGACAGAGGUGCAAGUUCUGCCU-ACAAAAAAUGAAGCUAACUCUGUUUGCACUGCAAAAAGACUUGCGAAAGUGUAAAGU
(((((((((.---...))).......----....(..((.(((((.......))))))).-.)..))))))............((((((((((((......))))...)))))))).. ( -26.00)
>DroYak_CAF1 91525 112 - 1
CAUUUUUGGGGUAAAGCUCCCCAA-A----AAAAGGGGGACAUAGGUGCAAGUCCUGACUGACAGAAAGUGAAGCUACCUUUGU-UGCACUGCAAAAAGAGUUUCGAAAGUGAAAAGU
((((((((..(....(..((((..-.----....))))..)...(((((..(((......)))....((..(((....)))..)-))))))..........)..))))))))...... ( -28.80)
>consensus
CAUUUUGGGG_GAAAACUCCCCAA_A____AAAAGGGGGACAGAGGUGCAAGUUCUGACUAACAGAAAAUGAAGCUACCUUUGU_UGCACUGCAAAAAGAGUUUCGAAAGUGAAAAAA
((((((...........(((((............)))))((((((((((...(((((.....)))))......)).))))))))......................))))))...... (-15.07 = -16.32 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:14 2006