| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,831,820 – 17,831,913 |
| Length | 93 |
| Max. P | 0.760707 |
| Location | 17,831,820 – 17,831,913 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 78.30 |
| Mean single sequence MFE | -21.27 |
| Consensus MFE | -11.39 |
| Energy contribution | -13.62 |
| Covariance contribution | 2.22 |
| Combinations/Pair | 1.05 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.50 |
| SVM RNA-class probability | 0.760707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17831820 93 + 22224390 GGCGAAAAUGAGAAUGGGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAACCACCACAUUUCCCAUUUUCC--GCUCUUCCACCCGCCCCC ((((.....(((((((((((..(((((.....)))))...(((..((...))..)))......))))))))))).--(......)...))))... ( -24.70) >DroPse_CAF1 104800 79 + 1 GGCGAAAAUGAGAAUGAAACUAAAACGUUAAACGUUUCUUUGGCGCCACACCAUCC--------UCCC----UCA--GC--CCCCACCCACCUUG ((((..((.((((....(((......))).....)))).))..)))).........--------....----...--..--.............. ( -11.10) >DroSec_CAF1 89426 93 + 1 GGCGAAAAUGAGAAUGGGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAACAACCACAUUUCCCAUUUUCC--GCUUUCCCACCCGCCCUC ((.((((..(((((((((((..(((((.....))))).(((((.....)))))..........))))))))))).--..)))))).......... ( -24.70) >DroEre_CAF1 91387 89 + 1 GGCGAAAAUGAGAAUGGGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAACCACCACAUUUCCCAUUUUCCCACCUUUCCCACCU------ ((.((((..(((((((((((..(((((.....)))))...(((..((...))..)))......))))))))))).....))))))....------ ( -24.20) >DroYak_CAF1 89867 93 + 1 GGCGAAAAUGAGAAUGGGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAACCACCACAUUUCCCAUUUUCC--GCUUUCCCACCUAACCAC ((.((((..(((((((((((..(((((.....)))))...(((..((...))..)))......))))))))))).--..)))))).......... ( -25.60) >DroAna_CAF1 100445 76 + 1 GGCGAAAAUGAGUAUGAGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAAG--------UUCCCGCCUGC---------C--UCCGCCCUC ((((.....(((......((..(((((.....)))))..))((((....(....)--------....))))...---------)--))))))... ( -17.30) >consensus GGCGAAAAUGAGAAUGGGAAUAAAACGUUAAACGUUUCUUUGGCGCCACCGGAACCACCACAUUUCCCAUUUUCC__GCUUUCCCACCCGCCCUC .........(((((((((((..(((((.....))))).(((((.....)))))..........)))))))))))..................... (-11.39 = -13.62 + 2.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:13 2006