| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,810,427 – 17,810,527 |
| Length | 100 |
| Max. P | 0.784834 |
| Location | 17,810,427 – 17,810,527 |
|---|---|
| Length | 100 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 73.62 |
| Mean single sequence MFE | -47.65 |
| Consensus MFE | -27.73 |
| Energy contribution | -28.23 |
| Covariance contribution | 0.50 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.57 |
| SVM RNA-class probability | 0.784834 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17810427 100 + 22224390 GCGAUCCUCCCCAAGGCCAUAGAGGCCGGCAACGGCGGCCAUGCCACC-----------AGGUGGGCCUCAGGCACACCUGCUCCGCCGAUGGUGGACGUGG------ACAGGGAAC .......((((...((((......((((....)))))))).(((((((-----------(((((.(((...))).)))))).((((((...)))))).))))------.)))))).. ( -48.50) >DroPse_CAF1 79550 96 + 1 GCGAUCCUCGCCGAGGCCAUACAGGCCGGCAACGGCGGCCAUGCCACCUCCCGUUCACCAGAUGGCCGCCAAAG--ACGCGCCCCGCCGCCACUGGGC------------------- (((.((...(((..((((.....)))))))...(((((((((...................)))))))))...)--))))((((.(......).))))------------------- ( -39.91) >DroSec_CAF1 68459 100 + 1 GCGAUCCUCCCCAAGGCCGUAGAGGCCGGCGACGGCGGCCAUGCCACC-----------AGGUGGGCCUCAGGCACACCUGCUCCGCCGAUGGUGGACGUGG------ACAGGGGAC .......(((((..((((......((((....)))))))).(((((((-----------(((((.(((...))).)))))).((((((...)))))).))))------.))))))). ( -51.40) >DroEre_CAF1 68785 106 + 1 GCGAUCCUCCCCAAGGCCGUAGAGGCCGGCGACGGCGGCCAUGCCACC-----------AGGUGGCCCUCGGGCUCACCUGCUCCGCCGAUGGUGGACGUGGACGUGGACAGGGGAC .......(((((..((((.....)))).((....))(.((((((((((-----------((((((((....))).)))))).((((((...)))))).)))).))))).).))))). ( -55.70) >DroYak_CAF1 68402 103 + 1 GCGAUCCUCCCCAAGGCCAUAGAGGCCGGCAACGGCGGCCAUGCCACC-----------AGGUGGCCCGCAGGCUCACCUGCUCCGCCGAUGGUGGACGUGGG---GUACAGGGGAC .......(((((...(((......((((....))))..((((((((((-----------((((((...(((((....))))).)))))..)))))).))))))---))...))))). ( -57.00) >DroPer_CAF1 80757 96 + 1 GCGAUCCUCGCCGAGGCCAUACAGGCCGGCAACGGCGGCCAUGCCACCUCCCGUUCACCAGAUCGCCGCCAAAG--ACGCGCCCCGCCGCCACUGGGC------------------- (((.((...(((..((((.....)))))))...((((((.((...................)).))))))...)--))))((((.(......).))))------------------- ( -33.41) >consensus GCGAUCCUCCCCAAGGCCAUAGAGGCCGGCAACGGCGGCCAUGCCACC___________AGGUGGCCCUCAGGC_CACCUGCUCCGCCGAUGGUGGACGUGG______ACAGGGGAC (((...........((((......((((....))))))))..((((((............)))))).............)))(((((.....))))).................... (-27.73 = -28.23 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:07 2006