Locus 71

Sequence ID X_DroMel_CAF1
Location 316,586 – 316,686
Length 100
Max. P 0.689444
window89

overview

Window 9

Location 316,586 – 316,686
Length 100
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 80.47
Mean single sequence MFE -22.12
Consensus MFE -15.16
Energy contribution -15.36
Covariance contribution 0.20
Combinations/Pair 1.16
Mean z-score -1.51
Structure conservation index 0.69
SVM decision value 0.33
SVM RNA-class probability 0.689444
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 316586 100 + 22224390
--------UACUCAGGUUUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACUCGAAAACUUGUUUGCACAGAUA-------GA-CCUAAGCUCCAAAAAAA-
--------..(((((((.....(....).))))))).....(((........(((((((...(((..(((....)))..)))...))))-------))-)......))).......- ( -23.84)
>DroSec_CAF1 59560 100 + 1
--------UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCGCAGAUA-------UA-CCUAAGCUCCAAAAAAA-
--------..(((((((.....(....).))))))).....(((........((.((((...(((.((((....)))).)))...))))-------.)-)......))).......- ( -22.14)
>DroSim_CAF1 80195 100 + 1
--------UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCGCAGAUA-------UA-CCUAAGCUCCAAAAAAA-
--------..(((((((.....(....).))))))).....(((........((.((((...(((.((((....)))).)))...))))-------.)-)......))).......- ( -22.14)
>DroEre_CAF1 60244 108 + 1
--------UACUCAGGUCUGUUGGAAACUACCUGAGAGGCCGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCACAGACAGACCUAAGA-CCUAAGCUCCAAAAAAAC
--------..((.(((((((((.((..(..((.....))..)..))............(((.(((.((((....)))).))))))))))))))).)).-.................. ( -24.50)
>DroYak_CAF1 80975 102 + 1
--------UACUCAGGUCUGUUGGAAACUACCUGAGAGCCCGGCUCAAAAAAGUUUAUUGUAGCACAUGAAAACUUGUUUGCACAGAC------AAGA-CCUAAGCUCCAAAAAAAU
--------...((((((.....(....).))))))((((...((((((.........))).))).........(((((((....))))------))).-.....))))......... ( -22.70)
>DroAna_CAF1 76521 110 + 1
ACUGACAGGACUCAGGUCUCCGUAGCACUACCUGAGAACC-----CGAAAAAGUUUAUUGUAGCAGACCGAAACUAGUUUCCAAAAACAGAC--AAUAUCUUAAGCUUCUCGAAAAC
.......((.(((((((............)))))))..))-----(((..(((((((((((........((((....)))).........))--)))).....))))).)))..... ( -17.43)
>consensus
________UACUCAGGUCUGUUGGAAACUACCUGAGAGGAAGGAUCAAAAAAGUUUAUUGUAGCACACGAAAACUUGUUUGCACAGACA_______GA_CCUAAGCUCCAAAAAAA_
..........(((((((.....(....).)))))))...............((((((((((.(((.((((....)))).)))))))...............)))))).......... (-15.16 = -15.36 +   0.20) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:33:06 2006