Locus 7099

Sequence ID X_DroMel_CAF1
Location 17,809,578 – 17,809,690
Length 112
Max. P 0.559381
window11588

overview

Window 8

Location 17,809,578 – 17,809,690
Length 112
Sequences 4
Columns 112
Reading direction reverse
Mean pairwise identity 85.11
Mean single sequence MFE -26.53
Consensus MFE -24.20
Energy contribution -23.57
Covariance contribution -0.63
Combinations/Pair 1.12
Mean z-score -1.30
Structure conservation index 0.91
SVM decision value 0.05
SVM RNA-class probability 0.559381
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17809578 112 - 22224390
UUUAUCUGACCCUACAGCUGGCACAGAUCUUGGGGCACUUGGCUGCACCACCUGAGCCACCUGCACCACCCAAUCCACCCAAUCCACCCAAACCACCUGAGCCACUCGAGAA
...........((..((.((((.(((...((((((((..(((((.((.....)))))))..)))......................))))).....))).))))))..)).. ( -23.24)
>DroSec_CAF1 67606 109 - 1
UUUAUCUGCCCCUACAGCUGGCACAGAUCUCGGGGCACUUGGCUGCACCACCUGAGCCACCUGCACCUGC---ACCACCCAAUCCACCCAAACCAGCUGAACCACUCGAGAA
..............(((((((....(....)((((((..(((((.((.....)))))))..))).)))..---...................)))))))............. ( -26.30)
>DroEre_CAF1 68010 94 - 1
UUUAUCUGUCCCGGCAGCUGGCACAGAUCUCGGGGCACUUGGCUGCACCACCUGAGCCACCUGCACCA------------------CCCGAACCAGCUGAACCACUCGAGGA
........(((((((((((((........((((((((..(((((.((.....)))))))..)))....------------------))))).)))))))......))).))) ( -30.20)
>DroYak_CAF1 67705 104 - 1
UUUAUCUGCCCCUACAGCUGGCACAGAUCUCGGGGCACUUGGCUGCACCACCUGAGCCACCUGCACCAC--------CCCGAGCCACCCAAACCAACUGAACCACUCGAGGA
...(((((..((.......))..)))))(((((((((..(((((.((.....)))))))..))).....--------))))))..................((......)). ( -26.40)
>consensus
UUUAUCUGCCCCUACAGCUGGCACAGAUCUCGGGGCACUUGGCUGCACCACCUGAGCCACCUGCACCAC________CCCAAUCCACCCAAACCAGCUGAACCACUCGAGAA
....((((..((.......))..))))((((((((((..(((((.((.....)))))))..)))........................((.......)).....))))))). (-24.20 = -23.57 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:02 2006