Locus 7098

Sequence ID	X_DroMel_CAF1
Location	17,808,495 – 17,808,592
Length	97
Max. P	0.990931

overview

Window 6

Location	17,808,495 – 17,808,592
Length	97
Sequences	5
Columns	98
Reading direction	forward
Mean pairwise identity	71.95
Mean single sequence MFE	-31.90
Consensus MFE	-7.22
Energy contribution	-7.94
Covariance contribution	0.72
Combinations/Pair	1.14
Mean z-score	-2.38
Structure conservation index	0.23
SVM decision value	2.16
SVM RNA-class probability	0.989287
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17808495 97 + 22224390
UUUAUUUUGAAUG-GUGGAAGGGGGGAAAGGGAGGUGAAAGAGGUCCUGCUUGACAGGAACUGACUGCCUGGCGCCCUGCAACUCUUGAACAAAAUAA
.((((((((...(-(.(...((((.(..(((.((.....((...(((((.....))))).))..)).)))..).))))....).))....)))))))) ( -28.50)
>DroSec_CAF1 66599 92 + 1
UUUAUUUUGAGGG-GGAGGAGGGGGGCAUGGG-----AAAGAGGUCCUGCUUGACAAGAACUGACUGCCUGGCGCCCUGCAACUCUUGAACAAAAUAA
.((((((((...(-((((..(.(((((.((((-----.....(((.((........)).))).....))))..))))).)..)))))...)))))))) ( -29.40)
>DroEre_CAF1 67006 81 + 1
UUUAUUUUGCGGG-GAAGGGG----------------CGAGAGGUCCUGCUUGACAGGACCUGACUGCCUGGCGCCCUGCAACUCUUGAACAAAAUAA
......(((((((-(...(((----------------((..((((((((.....))))))))...)))))....))))))))................ ( -33.90)
>DroYak_CAF1 66652 97 + 1
UUUAUUUUGAGGG-UGAGGGGUGGAGGAGUGGAGGGGGUAGAGGUCCUGCUUGACAGGACCUGACUGCCUGGCGCCCUGCAACUCUUGAACAAAAUAA
.((((((((....-((((((.((.(((.(((.(((.(((..((((((((.....)))))))).))).)))..)))))).)).))))))..)))))))) ( -41.10)
>DroAna_CAF1 75563 91 + 1
UUUUUGUUGCAUACAUGGCAGGAGU---AUAAAGGGGGGGGAGGCAUAUCCUGACAGG--CUGCCCGACUGGCGCCCUGCACUUC--CAACAAAAUAA
.((((((((........(((((.(.---.(...((..(((.((.(...........).--)).)))..)).)..)))))).....--))))))))... ( -26.62)
>consensus
UUUAUUUUGAGGG_GGAGGAGGGGGG_AAGGGAGG_GAAAGAGGUCCUGCUUGACAGGAACUGACUGCCUGGCGCCCUGCAACUCUUGAACAAAAUAA
.((((((((..............................((.(((...(((.(.(((.......))).).))))))))....(....)..)))))))) ( -7.22 =  -7.94 +   0.72)

alignment

secondary structure

dotplot

Window 7

Location	17,808,495 – 17,808,592
Length	97
Sequences	5
Columns	98
Reading direction	reverse
Mean pairwise identity	71.95
Mean single sequence MFE	-25.46
Consensus MFE	-9.86
Energy contribution	-11.58
Covariance contribution	1.72
Combinations/Pair	1.09
Mean z-score	-2.36
Structure conservation index	0.39
SVM decision value	2.24
SVM RNA-class probability	0.990931
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17808495 97 - 22224390
UUAUUUUGUUCAAGAGUUGCAGGGCGCCAGGCAGUCAGUUCCUGUCAAGCAGGACCUCUUUCACCUCCCUUUCCCCCCUUCCAC-CAUUCAAAAUAAA
((((((((.....(.((.(.((((.(..(((.((..((.(((((.....))))).)).......)).)))...).)))).).))-)...)))))))). ( -18.80)
>DroSec_CAF1 66599 92 - 1
UUAUUUUGUUCAAGAGUUGCAGGGCGCCAGGCAGUCAGUUCUUGUCAAGCAGGACCUCUUU-----CCCAUGCCCCCCUCCUCC-CCCUCAAAAUAAA
((((((((.....(((..(..(((((...((.((..((.(((((.....))))).))..))-----))..)))))..)..))).-....)))))))). ( -24.00)
>DroEre_CAF1 67006 81 - 1
UUAUUUUGUUCAAGAGUUGCAGGGCGCCAGGCAGUCAGGUCCUGUCAAGCAGGACCUCUCG----------------CCCCUUC-CCCGCAAAAUAAA
(((((((((....(((.....((((((...)).(..((((((((.....))))))))..))----------------)))))).-...))))))))). ( -28.60)
>DroYak_CAF1 66652 97 - 1
UUAUUUUGUUCAAGAGUUGCAGGGCGCCAGGCAGUCAGGUCCUGUCAAGCAGGACCUCUACCCCCUCCACUCCUCCACCCCUCA-CCCUCAAAAUAAA
((((((((.....(((.((.((((....(((..((.((((((((.....))))))))..))..)))....)))).))...))).-....)))))))). ( -28.90)
>DroAna_CAF1 75563 91 - 1
UUAUUUUGUUG--GAAGUGCAGGGCGCCAGUCGGGCAG--CCUGUCAGGAUAUGCCUCCCCCCCCUUUAU---ACUCCUGCCAUGUAUGCAACAAAAA
...((((((((--...((((((((((((.....))).)--)))(.(((((((((.............)))---).))))).).))))).)))))))). ( -27.02)
>consensus
UUAUUUUGUUCAAGAGUUGCAGGGCGCCAGGCAGUCAGGUCCUGUCAAGCAGGACCUCUCCC_CCUCCAUU_CCCCCCUCCUAC_CCCUCAAAAUAAA
((((((((.....((.((((..(....)..))))))((.(((((.....))))).))................................)))))))). ( -9.86 = -11.58 +   1.72)

alignment

secondary structure

dotplot

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:01 2006