Locus 7097

Sequence ID X_DroMel_CAF1
Location 17,801,337 – 17,801,442
Length 105
Max. P 0.741261
window11585

overview

Window 5

Location 17,801,337 – 17,801,442
Length 105
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 91.07
Mean single sequence MFE -44.10
Consensus MFE -31.80
Energy contribution -31.88
Covariance contribution 0.08
Combinations/Pair 1.07
Mean z-score -2.26
Structure conservation index 0.72
SVM decision value 0.45
SVM RNA-class probability 0.741261
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17801337 105 + 22224390
CAGCUGCUCCUCCGCUGGAAGCUGGAAGCUGUCAGCUGGG-------CUUCCAGGCUGGGAAUACUGCCGCGGAGCGAGCUUGAGCUUCGCC--AGAUUCCUCAAUGAAUAAAG
.....((((((((((((((((((...(((.....))).))-------))))))(((.(......).))))))))).))))(((((..((...--.))...)))))......... ( -44.00)
>DroSec_CAF1 59818 105 + 1
CAGCUGCUCCGCCGCUGGAAGCUGGAAGCUGUCAGCUGGG-------CUUCCAGGCUGCGAAUCCUGCCGCGGAGCGAGCUUGAGCUUCGUC--AGAUUCCUCAAUGAAUAAAG
.(((((((((((.((.((((((((((((((........))-------)))))).))).....))).)).))))))).))))((((..((...--.))...)))).......... ( -44.70)
>DroSim_CAF1 57357 105 + 1
CAGCUGCUCCGCCGCUGGAAGCUGGAAGCUGUCAGCUGGG-------CUUCCAGGGUGCGAAUCCUGCCGCGGAGCGAGCUUGAGCUUCGUC--AGAUUCCUCAAUGAAUAAAG
.(((((((((((.((.(((((((...(((.....))).))-------)))))(((((....))))))).))))))).))))((((..((...--.))...)))).......... ( -45.30)
>DroEre_CAF1 58887 105 + 1
CAGCUGCUCCGCCGCUGGAAGCUGGAAGCUGUCAGCUGGG-------CUUCCAGGCUGGGAAUCUUGACGAGGAGCGAGCUUGAGCUUUGCC--AGAUUCCUCAAUGAAUAAAG
(((((((((((....))).)))((((((((........))-------)))))))))))(((((((.(.(((((..((....))..)))))).--)))))))............. ( -37.60)
>DroYak_CAF1 59401 113 + 1
CAGCUGCUCCGCCGCUGGAGGCUGGAAGCUGUCAGCUGGACUUCCAGCUUCCAGGCUGGGAAUCAUGCCGAGGAGCGAGCUUGAGCUUCGCUUUAGAUU-CUCAAUGAAUAAAG
.((((((((((((..(((((((((((((((.......)).))))))))))))))))(((........))).))))).))))((((..((......))..-)))).......... ( -48.90)
>consensus
CAGCUGCUCCGCCGCUGGAAGCUGGAAGCUGUCAGCUGGG_______CUUCCAGGCUGGGAAUCCUGCCGCGGAGCGAGCUUGAGCUUCGCC__AGAUUCCUCAAUGAAUAAAG
.(((((((((.((((((..(((.....)))..)))).))..............(((..........)))..))))).))))((((..((......))...)))).......... (-31.80 = -31.88 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:30:00 2006