| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,795,659 – 17,795,775 |
| Length | 116 |
| Max. P | 0.711214 |
| Location | 17,795,659 – 17,795,775 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 81.99 |
| Mean single sequence MFE | -46.28 |
| Consensus MFE | -28.66 |
| Energy contribution | -30.05 |
| Covariance contribution | 1.39 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.22 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.711214 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17795659 116 + 22224390 CAUCGCUCGAUGAAAUCGAUGCGGGAAAUGGUUGAGGACGAGCAAGUGGUGCGAAUCGCUAAUUGCGCCAAUGCUCAGCCUGCUCGGAUGGCGUAUCCUGGCCGCGCCCUCGACCU ..(((((((((...))))).)))).....((((((((..(((((..((((((((........)))))))).))))).(((.(((.(((((...))))).))).).)))))))))). ( -50.80) >DroPse_CAF1 63510 110 + 1 CAUCUCUCGAUGAAAUCGAUGCGGGAAAUGGUUGGAGACGAGCAAGUUGUGCGAAUUUCUAACUGCGCCAAUGCUCAGCGCAGGCGCA-GGCGCA-----GCCACGGGCCCGAUCU ((((....)))).....(((.((((...((.(((....))).)).((((((((.....)...(((((((..(((.....)))))))))-))))))-----))......))))))). ( -43.10) >DroSim_CAF1 51725 116 + 1 CAUCGCUCGAUGAAAUCGAUGCGGGAAAUGGUUGAGGACGAGCAAGUGGUGCGAAUCGCUAAUUGCGCCAAUGCUCAGCCUGCUCGGAUGGCGUAUCCUGGCCGCGCCCUCGACCU ..(((((((((...))))).)))).....((((((((..(((((..((((((((........)))))))).))))).(((.(((.(((((...))))).))).).)))))))))). ( -50.80) >DroYak_CAF1 53565 116 + 1 CAUCGCUCGAUGAAAUCGAUGCGGGAAAUGGUUGAGGACGAGCAAGUGGUGCGAAUCGCUAAUUGCGCCAAUGCUCAGGCUUCUCGGAUGGCGUAUCCUGGCCGCGCCCUCGACCU ..(((((((((...))))).)))).....((((((((.((((((..((((((((........)))))))).))))).((((....(((((...))))).))))..).)))))))). ( -50.50) >DroAna_CAF1 60430 103 + 1 CAUCUCUCGAUGAAAUCGAUGCGGGAAAUGGUUGAGGACGAGCGAGUGGUGCGUAUCGCUAAAUGGGCCACUGCUCAGCUGGC------------UCCAGGCCUCC-UCCAGACCU ..(((((((((...)))))...))))...(((((((((.((((.((((((.(((........))).))))))))))....(((------------.....))))))-))..)))). ( -38.60) >DroPer_CAF1 64378 110 + 1 CAUCUCUCGAUGAAAUCGAUGCGGGAAAUGGUUGGAGACGAGCAAGUUGUGCGAAUUUCUAACUGCGCCAAUGCUCAGCGCAGGCGCA-GGCGCA-----GCCCCGGGCCCGAUCU ((((....))))..((((.(.((((...((.(((....))).)).((((((((.....)...(((((((..(((.....)))))))))-))))))-----)))))).)..)))).. ( -43.90) >consensus CAUCGCUCGAUGAAAUCGAUGCGGGAAAUGGUUGAGGACGAGCAAGUGGUGCGAAUCGCUAAUUGCGCCAAUGCUCAGCCUGCUCGGA_GGCGUAUCCUGGCCGCGCCCCCGACCU .....((((.((....))...))))....((((((((..(((((..((((((((........)))))))).))))).............(((........)))....)))))))). (-28.66 = -30.05 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:59 2006