| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,791,426 – 17,791,533 |
| Length | 107 |
| Max. P | 0.996263 |
| Location | 17,791,426 – 17,791,533 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 92.51 |
| Mean single sequence MFE | -33.21 |
| Consensus MFE | -30.64 |
| Energy contribution | -30.95 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.03 |
| Mean z-score | -3.26 |
| Structure conservation index | 0.92 |
| SVM decision value | 2.67 |
| SVM RNA-class probability | 0.996263 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17791426 107 - 22224390 GAUCCGGCUGCAAAUAAAAGUCCGGGUGCAAAUCCGGACGGCAGGUGUAUUUCCAAGGCAAAUUGGUGAAAUGCAAUGCAGUUCUGGAAAA-----AAAAGAACAGGGGAAG ..(((.((((((.......((((((((....))))))))......(((((((((((......))))..))))))).))))))((((.....-----.......))))))).. ( -35.40) >DroSec_CAF1 50003 106 - 1 GAUCCGGCUGCAAAUAAAAGUCCGGGUGCAAAUCCGGACGGCAGGUGUAUUUCCAAGGCAAAUUGGUGAAAUGCAAUGCAGUUCUGGAAAA-----AA-AAAACAUGGGAAG ..((((((((((.......((((((((....))))))))......(((((((((((......))))..))))))).)))))..)))))...-----..-............. ( -34.60) >DroSim_CAF1 48406 105 - 1 GAUCCGGCUGCAAAUAAAAGUCCGGGUGCAAAUCCGGACGGCAGGUGUAUUUCCAAGGCAAAUUGGUGAAAUGCAAUGCAGUUCUGGAAAA------A-AAAACAUGGGAAG ..((((((((((.......((((((((....))))))))......(((((((((((......))))..))))))).)))))..)))))...------.-............. ( -34.60) >DroYak_CAF1 49749 110 - 1 GAUCCGGCUGCAAAUAAAAGUCCGAGUGCAGGUCCGCACGGCAGGUGUAUUUCCAAGGCAAAUUGGUGAAAUGCAAUGCAGUUCUGGACA-CAAAAAG-AAAACAGGGGAAG ..(((..(((((..............)))))(((((.((.(((..(((((((((((......))))..))))))).))).))..))))).-.......-........))).. ( -28.24) >consensus GAUCCGGCUGCAAAUAAAAGUCCGGGUGCAAAUCCGGACGGCAGGUGUAUUUCCAAGGCAAAUUGGUGAAAUGCAAUGCAGUUCUGGAAAA_____AA_AAAACAGGGGAAG ..((((((((((.......((((((((....))))))))......(((((((((((......))))..))))))).)))))..)))))........................ (-30.64 = -30.95 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:58 2006