Locus 7094

Sequence ID X_DroMel_CAF1
Location 17,786,181 – 17,786,289
Length 108
Max. P 0.519260
window11582

overview

Window 2

Location 17,786,181 – 17,786,289
Length 108
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 83.06
Mean single sequence MFE -25.42
Consensus MFE -17.94
Energy contribution -18.58
Covariance contribution 0.64
Combinations/Pair 1.12
Mean z-score -1.56
Structure conservation index 0.71
SVM decision value -0.03
SVM RNA-class probability 0.519260
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17786181 108 - 22224390
AUACAAAUUGCGUUGGCUGGAAGUGCGGUUCAAAAAGGGAAAGCCUUUGUACAAUGCAA-----------UAAUA-AAUUGUCAAUAAAUCGAAGUAUUCUAAUCGAAUAGCUUUGGCUU
......(((((((((....((((.((..(((......)))..))))))...))))))))-----------)....-.............(((((((((((.....)))).)))))))... ( -25.10)
>DroSec_CAF1 44848 116 - 1
-UACAAAUUGCCUUGGCUGGAAGUGCGGUUUA--AAGGGAAAGCCUUUGUACAACACAAAUUUGUCAAUACAAUA-AUUUGUCAAUAAAUCGAAGUAUUCUAAUCGAAUAUCUUUGGCUU
-.((((((((..(((((.....(((..((.((--((((.....)))))).))..)))......))))).....))-)))))).......(((((((((((.....))))).))))))... ( -25.30)
>DroSim_CAF1 43266 105 - 1
-UACAAAUUGCGUUGGCUGGAAGUGCGGUUUA--AAGGGAAAGCCUUUGUACAAUGCAA-----------UAAUA-AUUUGUCAAUAAAUCGAAGUAUUCUAAUCGAAUAGCUUUGGCUU
-.....(((((((((((((......)))).((--((((.....))))))..))))))))-----------)....-.............(((((((((((.....)))).)))))))... ( -24.70)
>DroEre_CAF1 43057 100 - 1
------AUUGCGUUGGCUGAAAGUGCGGUUCA--AAGGGAAAGCCUUUGUACAAUGCAU-----------UAAUA-AAUUCUCAAUAAAUCGAAGUAUUCUAAUCGAACAGCUUUGGCUU
------...((...(((((..(((((.((.((--((((.....)))))).))...))))-----------)....-.............((((((....))..)))).)))))...)).. ( -23.90)
>DroYak_CAF1 43810 106 - 1
-UAAACAUUGCGUUGGUUGGCAGGGCAGUUCA--AAGGGAAAGCCUUUUUACAAUGCAU-----------UAAUGUCAUUGUCAAUAGAACACAGUAUGCUAGUCGAAUAGCUUUGGCUU
-....((..((.(((..(((((..((.(((((--(((((....)))))).((((((((.-----------...)).)))))).....))))...)).)))))..)))...))..)).... ( -28.10)
>consensus
_UACAAAUUGCGUUGGCUGGAAGUGCGGUUCA__AAGGGAAAGCCUUUGUACAAUGCAA___________UAAUA_AAUUGUCAAUAAAUCGAAGUAUUCUAAUCGAAUAGCUUUGGCUU
........(((((((....((((.((..(((......)))..))))))...)))))))................................((((((((((.....))))).))))).... (-17.94 = -18.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:57 2006