Locus 7093

Sequence ID X_DroMel_CAF1
Location 17,785,124 – 17,785,233
Length 109
Max. P 0.588242
window11581

overview

Window 1

Location 17,785,124 – 17,785,233
Length 109
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 94.91
Mean single sequence MFE -24.78
Consensus MFE -22.41
Energy contribution -22.60
Covariance contribution 0.19
Combinations/Pair 1.03
Mean z-score -1.10
Structure conservation index 0.90
SVM decision value 0.11
SVM RNA-class probability 0.588242
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17785124 109 - 22224390
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAG----------
...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.30)
>DroVir_CAF1 61629 109 - 1
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCCUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU----------
...(((((........((((((((.(.((...(((......)))..))).))))))-))....................((((((((....)))))))).))))).....---------- ( -23.50)
>DroGri_CAF1 54701 109 - 1
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAGCUAACUGUCAGGUAU----------
...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.30)
>DroWil_CAF1 62308 119 - 1
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACAUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAACUAUAAGUGA
......(((.......((((((((.((((...(((......)))..))))))))))-))((((..((....((...((.((((((((....)))))))).)).)).))..))))..))). ( -26.30)
>DroMoj_CAF1 54098 109 - 1
AAAUGGCACAAAAAUCGAGGAGGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC-UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU----------
...(((((........((((((((.((((...(((......)))..))))))))))-))....................((((((((....)))))))).))))).....---------- ( -25.00)
>DroPer_CAF1 55519 110 - 1
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCCAUUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAG----------
...(((((..........((((((.((((...(((......)))..)))))))))).......................((((((((....)))))))).))))).....---------- ( -23.30)
>consensus
AAAUGGCACAAAAAUCGAGGAAGACGAGGUGCCUGACAUCACAGAUCCUUUCUUCC_UUAUAGAAACGUUAUGUAUUAUUUGGUUUACAUUUGAACUAACUGUCAGGUAU__________
....(((((.....(((.......))).)))))(((((..(((...(.(((((........))))).)...))).....((((((((....)))))))).)))))............... (-22.41 = -22.60 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:56 2006