Locus 7092

Sequence ID X_DroMel_CAF1
Location 17,784,989 – 17,785,097
Length 108
Max. P 0.981553
window11580

overview

Window 0

Location 17,784,989 – 17,785,097
Length 108
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 92.73
Mean single sequence MFE -24.84
Consensus MFE -22.46
Energy contribution -22.38
Covariance contribution -0.08
Combinations/Pair 1.10
Mean z-score -1.69
Structure conservation index 0.90
SVM decision value 1.89
SVM RNA-class probability 0.981553
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17784989 108 + 22224390
ACAUAGCUUUU------UUUCAACGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA
.....((....------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30)
>DroSec_CAF1 43661 107 + 1
ACAUAGCUUU-------UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA
.....((...-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30)
>DroSim_CAF1 42078 107 + 1
ACAUAGCUUU-------UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA
.....((...-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... ( -24.30)
>DroEre_CAF1 41876 107 + 1
ACAUAGUUUU-------UUUUAAGAAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAAUUAGGUGUAUGCAUA
..........-------.........(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((...(((((....)))))....))... ( -23.90)
>DroYak_CAF1 42625 114 + 1
ACAUAGCGUUUUUUUUUUUGCAAGAAAAAUGGAUAGAGAGAUAUUGUAUUCGAGUUUAAGAUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUGACUAGGUGUAUGCAUA
......((((((((((.....))))))))))((.(((((((((((((..((........))....)).))))))))))).))((.((((((((....).)))))))...))... ( -27.40)
>consensus
ACAUAGCUUU_______UUUCAAGGAGGAUGGAUAGAGAGAUAUUGUAUUCGAGUUCAAGUUCAAACUAAUAUUUCUCUUUCGUUCGCUUAGCUUAUAACUAGGUGUAUGCAUA
.....((...................(((((((.((((((((((((.....(((......)))....)))))))))))))))))))((((((.......))))))....))... (-22.46 = -22.38 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:55 2006