Locus 7086

Sequence ID X_DroMel_CAF1
Location 17,774,683 – 17,774,776
Length 93
Max. P 0.981629
window11571

overview

Window 1

Location 17,774,683 – 17,774,776
Length 93
Sequences 6
Columns 93
Reading direction reverse
Mean pairwise identity 75.78
Mean single sequence MFE -31.23
Consensus MFE -16.31
Energy contribution -15.62
Covariance contribution -0.69
Combinations/Pair 1.32
Mean z-score -2.50
Structure conservation index 0.52
SVM decision value 1.89
SVM RNA-class probability 0.981629
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17774683 93 - 22224390
AGUCCCACACAAUAAACGCAAGUGCAGCAGCGGCGACGAGCGGCAGCGGCAGUAGCGGUCUCACCAUGAGGCACAAUAAUGCCCUGGCCGUUA
.(((((.........((....))((....)))).))).((((((((.((((.((...(((((.....)))))....)).)))))).)))))). ( -34.60)
>DroVir_CAF1 49056 78 - 1
---C---AACAGUAAGCGUCAGUGCGGCAACU---------GGCAGCGCUGGAAGCAGUCUCACAAUGAGGCACAACAAUGCGCUGGCUGUUA
---.---((((((.(((((((((((.((....---------.)).))))))......(((((.....)))))........))))).)))))). ( -32.50)
>DroGri_CAF1 42424 78 - 1
---C---AACAAUAAGCGUCAAUGUGGCAACU---------GGCAGCGCUGGCAGCAGUCUCACAAUGAGGCACAACAAUGCGCUGGCUGUUA
---.---((((...((((.((.(((.((..(.---------.((...))..)..)).(((((.....)))))...))).))))))...)))). ( -24.00)
>DroSec_CAF1 33476 93 - 1
AGUCCCACACAAUAAACGCAAGUGCAGCAGCGACGACGAGCGGCAGCAGCAGUAGCGGCCUCACCAUGAGGCACAAUAAUGCCCUGGCCGUUA
.(((...........((....))((....)))))....((((((....(((.((...(((((.....)))))....)).)))....)))))). ( -29.20)
>DroYak_CAF1 32255 93 - 1
AGUCCCACACAAUAAACGCAAGCGCAGCAGCGGCAACCAGCGGCAGCGGCAGUAGCGGCCUCACCAUGAGGCACAAUAAUGCCCUGGCCGUUA
.(((............(....).((....)))))....((((((((.((((.((...(((((.....)))))....)).)))))).)))))). ( -31.40)
>DroMoj_CAF1 42065 78 - 1
---C---AACAAUAAGCGUCAGCGCAGCUACG---------GGCAGCGCCGGGAGCAGCCUCACAAUGAGGCACAACAAUGCGCUGGCUGUUA
---.---.......(((((((((((((((.(.---------(((...))).).))).(((((.....))))).......))))))))).))). ( -35.70)
>consensus
___C___AACAAUAAACGCAAGUGCAGCAACG_________GGCAGCGCCAGUAGCAGCCUCACAAUGAGGCACAACAAUGCCCUGGCCGUUA
..............(((((.((.(((................((.((....)).)).(((((.....))))).......))).)).)).))). (-16.31 = -15.62 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:47 2006