Locus 7084

Sequence ID X_DroMel_CAF1
Location 17,767,616 – 17,767,729
Length 113
Max. P 0.523448
window11567

overview

Window 7

Location 17,767,616 – 17,767,729
Length 113
Sequences 4
Columns 116
Reading direction forward
Mean pairwise identity 91.80
Mean single sequence MFE -28.25
Consensus MFE -21.50
Energy contribution -22.00
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.64
Structure conservation index 0.76
SVM decision value -0.02
SVM RNA-class probability 0.523448
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17767616 113 + 22224390
UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUGAUCGCUAUAUCUGCGAU-UAGUGUGUGCUCACGGCGAUAGUGUGUGUAUGCAUUUCUUUUUGGGGG--
.((((((.(((....))).))))))...............(((((.(((((((.......)))))-))((((((((.((((.(....))))).))))))))......)))))..-- ( -30.60)
>DroSec_CAF1 26539 112 + 1
AGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUAUCACUCGAUUGAUCGCUAUAUCUGCGAU-UAGUAAGUGCUCACGGCGAUAGUAUGUGUAUGCAUUUCUU-UUGGGGG--
(((((((.(((....))).)))))))..............(((((((((((((.......)))))-))))((((((.((((((....)).))))...))))))...-.))))..-- ( -28.70)
>DroEre_CAF1 24971 109 + 1
UGGGUAUUCUU-UUUAAGUGUACUCUCGUUUCUUUUCUCACUCGAUUCAUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUGCAUUUCUU-UUGGGGA--
.((((((.((.-....)).)))))).........((((((...((..((((((((((((...))))))))).))).))..(((((.(---(((....)))).))))-)))))))-- ( -24.80)
>DroYak_CAF1 25287 112 + 1
UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUUAUCGCUAUAUCUGCGAUAUAGUGUGUGCUCACGGAGAUA---UGUGUAUGCAUUUCUU-UUGGGGGGA
.((((((.(((....))).))))))..........((((.(((((..((((((.......)))))).(((((((((.((........---)).)))))))))....-))))))))) ( -28.90)
>consensus
UGGGUAUUCUUUUUUAAGUGUACUCUCGUUACUUUUCUCACUCGAUUGAUCGCUAUAUCUGCGAU_UAGUGUGUGCUCACGGAGAUA___UGUGUAUGCAUUUCUU_UUGGGGG__
.((((((.(((....))).))))))...............(((((...(((((.......)))))..(((((((((.((...........)).))))))))).....))))).... (-21.50 = -22.00 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:29:44 2006